Flux-sum analysis: a metabolite-centric approach for understanding the metabolic network. - Bevan Chung; Dong-Yup Lee (BMC Syst. Biol., 2009)

Computational codon optimization of synthetic gene for protein expression. - Bevan Chung; Dong-Yup Lee (BMC Syst. Biol., 2012)

Cofactor Modification Analysis: a Computational Framework to Identify cofactor specificity Engineering targets for strain Improvement. - Meiyappan Lakshmanan; Bevan Kai-Sheng Chung; Chengcheng Liu; Seon-Won Kim; Dong-Yup Lee (J. Bioinform. Comput. Biol., 2013)

Software applications for flux balance analysis. - Meiyappan Lakshmanan; Geoffrey Koh; Bevan Chung; Dong-Yup Lee (Briefings Bioinform., 2014)

Codon Optimization OnLine (COOL): a web-based multi-objective optimization platform for synthetic gene design. - Ju Xin Chin; Bevan Kai-Sheng Chung; Dong-Yup Lee (Bioinform., 2014)

Flux-sum analysis identifies metabolite targets for strain improvement. - Meiyappan Lakshmanan; Tae Yong Kim; Bevan Kai-Sheng Chung; Sang Yup Lee; Dong-Yup Lee (BMC Syst. Biol., 2015)