Phage Eco-Locator: a web tool for visualization and analysis of phage genomes in metagenomic data sets. - Ramy K. Aziz; Bhakti Dwivedi; Mya Breitbart; Robert A. Edwards (BMC Bioinform., 2011)

PhiSiGns: an online tool to identify signature genes in phages and design PCR primers for examining phage diversity. - Bhakti Dwivedi; Robert Schmieder; Dawn B. Goldsmith; Robert A. Edwards; Mya Breitbart (BMC Bioinform., 2012)

shinySISPA: A web tool for defining sample groups using gene sets from multiple-omics data. - Bhakti Dwivedi; Jeanne Kowalski (F1000Research, 2018)