ISN1 Nucleotidases and HAD Superfamily Protein Fold: In silico Sequence and Structure Analysis. - Bharath Srinivasan; Hemalatha Balaram (Silico Biol., 2007)

Experimental validation of FINDSITEcomb virtual ligand screening results for eight proteins yields novel nanomolar and micromolar binders. - Bharath Srinivasan; Hongyi Zhou; Julia Kubanek; Jeffrey Skolnick (J. Cheminformatics, 2014)

PoLi: A Virtual Screening Pipeline Based on Template Pocket and Ligand Similarity. - Ambrish Roy; Bharath Srinivasan; Jeffrey Skolnick (J. Chem. Inf. Model., 2015)

On the importance of composite protein multiple ligand interactions in protein pockets. - Sam Tonddast-Navaei; Bharath Srinivasan; Jeffrey Skolnick (J. Comput. Chem., 2017)

Entabolons: How Metabolites Modify the Biochemical Function of Proteins and Cause the Correlated Behavior of Proteins in Pathways. - Jeffrey Skolnick; Bharath Srinivasan; Samuel Skolnick; Brice Edelman; Hongyi Zhou (J. Chem. Inf. Model., 2025)