A Voice for Bioinformatics. - Carrie L. Ganote; Sheri A. Sanders; Bhavya Nalagampalli Papudeshi; Philip D. Blood; Thomas G. Doak (PEARC, 2017)

Ten simple rules and a template for creating workflows-as-applications. - Michael J. Roach 001; N. Tessa Pierce-Ward; Radoslaw Suchecki; Vijini Mallawaarachchi; Bhavya Nalagampalli Papudeshi; Scott A. Handley; C. Titus Brown; Nathan S. Watson-Haigh; Robert A. Edwards (PLoS Comput. Biol., 2022)

Phables: from fragmented assemblies to high-quality bacteriophage genomes. - Vijini Mallawaarachchi; Michael J. Roach 001; Przemyslaw Decewicz; Bhavya Nalagampalli Papudeshi; Sarah K. Giles; Susanna R. Grigson; George Bouras; Ryan D. Hesse; Laura K. Inglis; Abbey L. K. Hutton; Elizabeth A. Dinsdale; Robert A. Edwards (Bioinform., 2023)

Solving genomic puzzles: computational methods for metagenomic binning. - Vijini Mallawaarachchi; Anuradha Wickramarachchi; Hansheng Xue; Bhavya Nalagampalli Papudeshi; Susanna R. Grigson; George Bouras; Rosa E. Prahl; Anubhav Kaphle; Andrey Verich; Berenice Talamantes-Becerra; Elizabeth A. Dinsdale; Robert A. Edwards (Briefings Bioinform., 2024)

Dnaapler: A tool to reorient circular microbial genomes. - George Bouras; Susanna R. Grigson; Bhavya Nalagampalli Papudeshi; Vijini Mallawaarachchi; Michael J. Roach 001 (J. Open Source Softw., 2024)

Koverage: Read-coverage analysis for massive (meta)genomics datasets. - Michael J. Roach 001; Bradley J. Hart; Sarah J. Beecroft; Bhavya Nalagampalli Papudeshi; Laura K. Inglis; Susanna R. Grigson; Vijini Mallawaarachchi; George Bouras; Robert A. Edwards (J. Open Source Softw., 2024)