Batch RNAi selector: A standalone program to predict specific siRNA candidates in batches with enhanced sensitivity. - Shyamala Iyer; Kerry Deutsch; Xiaowei Yan; Biaoyang Lin (Comput. Methods Programs Biomed., 2007)

A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data. - Fan Mo; Xu Hong; Feng Gao; Lin Du; Jun Wang; Gilbert S. Omenn; Biaoyang Lin (BMC Bioinform., 2008)

WaveletQuant, an improved quantification software based on wavelet signal threshold de-noising for labeled quantitative proteomic analysis. - Fan Mo; Qun Mo; Yuanyuan Chen; David R. Goodlett; Leroy Hood; Gilbert S. Omenn; Song Li; Biaoyang Lin (BMC Bioinform., 2010)

Identification of cavities on protein surface using multiple computational approaches for drug binding site prediction. - Zengming Zhang; Yu Li; Biaoyang Lin; Michael Schroeder 001; Bingding Huang (Bioinform., 2011)

MetaDBSite: a meta approach to improve protein DNA-binding sites prediction. - Jing-Na Si; Zengming Zhang; Biaoyang Lin; Michael Schroeder 001; Bingding Huang (BMC Syst. Biol., 2011)

Identifying driver mutations from sequencing data of heterogeneous tumors in the era of personalized genome sequencing. - Jing Zhang; Jie Liu; Jianbo Sun; Chen Chen; Gregory Foltz; Biaoyang Lin (Briefings Bioinform., 2014)