mBARq: a versatile and user-friendly framework for the analysis of DNA barcodes from transposon insertion libraries, knockout mutants, and isogenic strain populations. - Anna Sintsova; Hans-Joachim Ruscheweyh; Christopher M. Field; Lilith Feer; Bidong D. Nguyen; Benjamin Daniel; Wolf-Dietrich Hardt; Julia A. Vorholt; Shinichi Sunagawa (Bioinform., 2024)

Metabolic network reconstruction as a resource for analyzing Salmonella Typhimurium SL1344 growth in the mouse intestine. - Evangelia Vayena; Lea Fuchs; Homa Mohammadi Peyhani; Konrad Lagoda; Bidong D. Nguyen; Wolf-Dietrich Hardt; Vassily Hatzimanikatis (PLoS Comput. Biol., 2025)