Satisficing the Conflicting Software Qualities of Maintainability and Performance at the Source Code Level. - Bill Andreopoulos (WER, 2004)

Clustering mixed numerical and low quality categorical data: significance metrics on a yeast example. - Bill Andreopoulos; Aijun An; Xiaogang Wang 007 (IQIS, 2005)

Multiple Layer Clustering of Large Software Systems. - Bill Andreopoulos; Aijun An; Vassilios Tzerpos; Xiaogang Wang 007 (WCRE, 2005)

Bi-level clustering of mixed categorical and numerical biomedical data. - Bill Andreopoulos; Aijun An; Xiaogang Wang 007 (Int. J. Data Min. Bioinform., 2006)

Translation and Rotation Invariant Mining of Frequent Trajectories: Application to Protein Unfolding Pathways. - Alexander Andreopoulos; Bill Andreopoulos; Aijun An; Xiaogang Wang 007 (PAKDD Workshops, 2007)

Hierarchical Density-Based Clustering of Categorical Data and a Simplification. - Bill Andreopoulos; Aijun An; Xiaogang Wang 007 (PAKDD, 2007)

Clustering by common friends finds locally significant proteins mediating modules. - Bill Andreopoulos; Aijun An; Xiaogang Wang 007; Michalis Faloutsos; Michael Schroeder 001 (Bioinform., 2007)

Visualising protein interaction networks with power graphs. - Loïc Royer; Matthias Reimann; Bill Andreopoulos; Michael Schroeder 001 (BMC Syst. Biol., 2007)

Finding molecular complexes through multiple layer clustering of protein interaction networks. - Bill Andreopoulos; Aijun An; Xiangji Huang 001; Xiaogang Wang 007 (Int. J. Bioinform. Res. Appl., 2007)

Clustering large software systems at multiple layers. - Bill Andreopoulos; Aijun An; Vassilios Tzerpos; Xiaogang Wang 007 (Inf. Softw. Technol., 2007)

Integration of Genomic, Proteomic and Biomedical Information on the Semantic Web. - Bill Andreopoulos; Aijun An; Xiangji Huang 001; Dirk Labudde (ER Workshops, 2008)

Word Sense Disambiguation in biomedical ontologies with term co-occurrence analysis and document clustering. - Bill Andreopoulos; Dimitra Alexopoulou; Michael Schroeder 001 (Int. J. Data Min. Bioinform., 2008)

Unraveling Protein Networks with Power Graph Analysis. - Loïc Royer; Matthias Reimann; Bill Andreopoulos; Michael Schroeder 001 (PLoS Comput. Biol., 2008)

A roadmap of clustering algorithms: finding a match for a biomedical application. - Bill Andreopoulos; Aijun An; Xiaogang Wang 007; Michael Schroeder 001 (Briefings Bioinform., 2009)

Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy. - Dimitra Alexopoulou; Bill Andreopoulos; Heiko Dietze; Andreas Doms; Fabien Gandon; Jörg Hakenberg; Khaled Khelif; Michael Schroeder 001; Thomas Wächter (BMC Bioinform., 2009)

Triangle network motifs predict complexes by complementing high-error interactomes with structural information. - Bill Andreopoulos; Christof Winter; Dirk Labudde; Michael Schroeder 001 (BMC Bioinform., 2009)

Efficient layered density-based clustering of categorical data. - Bill Andreopoulos; Aijun An; Xiaogang Wang 007; Dirk Labudde (J. Biomed. Informatics, 2009)

Efficient unfolding pattern recognition in single molecule force spectroscopy data. - Bill Andreopoulos; Dirk Labudde (Algorithms Mol. Biol., 2011)

Clustering Categorical Data. - Bill Andreopoulos (Data Clustering: Algorithms and Applications, 2013)

Optimization of I/O Intensive Genome Assemblies on the Cori Supercomputer with Burst Buffer. - Joshua Pritchett; Bill Andreopoulos (BCB, 2016)