Maestro: Design Challenges for a Group Calendar. - Billur Engin; Mehves Cetinkaya; Elif E. Ayiter; Murat Germen; Selim Balcisoy (IV, 2008)

A Strategy Based on Protein-Protein Interface Motifs May Help in Identifying Drug Off-Targets. - Billur Engin; Ozlem Keskin; Ruth Nussinov; Attila Gürsoy (J. Chem. Inf. Model., 2012)

A novel structural protein-protein interaction network model: Its applications on drug off-target prediction and genotype-phenotype linkage (Yeni bir yapısal protein-protein etkileşimi ağ modeli: Bu modelin ilaç uzak-hedeflerinin tahmininde ve genotip-fenotip bağlantısı kurmaktaki uygulamaları) - Billur Engin (2013)

Identifying Mutation Specific Cancer Pathways Using a Structurally Resolved Protein Interaction Network. - Billur Engin; Matan Hofree; Hannah Carter (Pacific Symposium on Biocomputing, 2015)

Erratum: Identifying mutation specific cancer pathways using a structurally resolved protein interaction network. - Billur Engin; Matan Hofree; Hannah Carter (PSB, 2018)