A multi-algorithm, multi-timescale method for cell simulation. - Kouichi Takahashi; Kazunari Kaizu; Bin Hu 025; Masaru Tomita (Bioinform., 2004)

GetBonNie for building, analyzing and sharing rule-based models. - Bin Hu 025; G. Matthew Fricke; James R. Faeder; Richard G. Posner; William S. Hlavacek (Bioinform., 2009)

Estimating the Probability of Polyreactive Antibodies 4E10 and 2F5 Disabling a gp41 Trimer after T Cell-HIV Adhesion. - Bin Hu 025; Hua-Xin Liao; S. Munir Alam; Byron Goldstein (PLoS Comput. Biol., 2014)

Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2. - Fengkai Zhang; Lucian P. Smith; Michael L. Blinov; James R. Faeder; William S. Hlavacek; José Juan Tapia; Sarah M. Keating; Nicolas Rodriguez 001; Andreas Dräger; Leonard A. Harris; Andrew Finney; Bin Hu 025; et al. (J. Integr. Bioinform., 2020)

Leveraging Ontologies within the National Microbiome Data Collaborative. - William D. Duncan; Faiza Ahmed; Fnu Anubhav; Jeffrey Baumes; Jonathan Beezley; Mark Borkum; Lisa M. Bramer; Shane Canon; Patrick S. G. Chain; Danielle Christianson; Yuri Corilo; Karen Davenport; et al. (ICBO, 2021)

A public website for the automated assessment and validation of SARS-CoV-2 diagnostic PCR assays. - Po-E Li; Adán Myers y Gutiérrez; Karen Davenport; Mark Flynn; Bin Hu 025; Chien-Chi Lo; Elais Player Jackson; Migun Shakya; Yan Xu; Jason D. Gans; Patrick S. G. Chain (Bioinform., 2021)

Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale. - Bin Hu 025; Shane Canon; Emiley A. Eloe-Fadrosh; Fnu Anubhav; Michal Babinski; Yuri Corilo; Karen Davenport; William D. Duncan; Kjiersten Fagnan; Mark Flynn; Brian Foster; David Hays; et al. (Frontiers Bioinform., 2021)

EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts. - Chien-Chi Lo; Migun Shakya; Ryan Connor; Karen Davenport; Mark Flynn; Adán Myers y Gutiérrez; Bin Hu 025; Po-E Li; Elais Player Jackson; Yan Xu; Patrick S. G. Chain (Bioinform., 2022)