A Discriminative Method for Protein Remote Homology Detection Based on N-nary Profiles. - Bin Liu 014; Lei Lin 001; Xiaolong Wang 001; Qiwen Dong; Xuan Wang 002 (BIRD, 2008)

A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis. - Bin Liu 014; Xiaolong Wang 001; Lei Lin 001; Qiwen Dong; Xuan Wang 002 (BMC Bioinform., 2008)

Protein Long Disordered Region Prediction Based on Profile-Level Disorder Propensities and Position-Specific Scoring Matrixes. - Bin Liu 014; Lei Lin 001; Xiaolong Wang 001; Xuan Wang 002; Yi Shen (BIBM, 2009)

Protein Remote Homology Detection Using Order Profiles. - Bin Liu 014; Lei Lin 001; Xiaolong Wang 001; Xuan Wang 002 (IJCBS, 2009)

Prediction of protein binding sites in protein structures using hidden Markov support vector machine. - Bin Liu 014; Xiaolong Wang 001; Lei Lin 001; Buzhou Tang; Qiwen Dong; Xuan Wang 002 (BMC Bioinform., 2009)

Exploiting three kinds of interface propensities to identify protein binding sites. - Bin Liu 014; Xiaolong Wang 001; Lei Lin 001; Qiwen Dong; Xuan Wang 002 (Comput. Biol. Chem., 2009)

Protein Remote Homology Detection and Fold Recognition based on Features Extracted from Frequency Profiles. - Lei Lin 001; Bin Liu 014; Xiaolong Wang 001; Xuan Wang 002; Buzhou Tang (J. Comput., 2011)

Cross-lingual Opinion Analysis via Negative Transfer Detection. - Lin Gui 003; Ruifeng Xu 001; Qin Lu 001; Jun Xu 007; Jian Xu 014; Bin Liu 014; Xiaolong Wang 001 (ACL (2), 2014)

A Sentence Vector Based Over-Sampling Method for Imbalanced Emotion Classification. - Tao Chen 026; Ruifeng Xu 001; Qin Lu 001; Bin Liu 014; Jun Xu 007; Lin Yao; Zhenyu He 001 (CICLing (2), 2014)

Reader Emotion Prediction Using Concept and Concept Sequence Features in News Headlines. - Yuanlin Yao; Ruifeng Xu 001; Qin Lu 001; Bin Liu 014; Jun Xu 007; Chengtian Zou; Li Yuan 002; Shuwei Wang; Lin Yao; Zhenyu He 001 (CICLing (2), 2014)

Credibility Estimation of Stock Comments Based on Publisher and Information Uncertainty Evaluation. - Qiaoyun Qiu; Ruifeng Xu 001; Bin Liu 014; Lin Gui 003; Yu Zhou 025 (ICMLC (CCIS volume), 2014)

A Storm-Based Real-Time Micro-Blogging Burst Event Detection System. - Yiding Wang; Ruifeng Xu 001; Bin Liu 014; Lin Gui 003; Bin Tang (ICMLC (CCIS volume), 2014)

Financial named entity recognition based on conditional random fields and information entropy. - Shuwei Wang; Ruifeng Xu 001; Bin Liu 014; Lin Gui 003; Yu Zhou 025 (ICMLC, 2014)

Emotion Cause Detection with Linguistic Construction in Chinese Weibo Text. - Lin Gui 003; Li Yuan 002; Ruifeng Xu 001; Bin Liu 014; Qin Lu 001; Yu Zhou 025 (NLPCC, 2014)

Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection. - Bin Liu 014; Deyuan Zhang; Ruifeng Xu 001; Jinghao Xu; Xiaolong Wang 001; Qingcai Chen; Qiwen Dong; Kuo-Chen Chou (Bioinform., 2014)

Using distances between Top-n-gram and residue pairs for protein remote homology detection. - Bin Liu 014; Jinghao Xu; Quan Zou 001; Ruifeng Xu 001; Xiaolong Wang 001; Qingcai Chen (BMC Bioinform., 2014)

Application of learning to rank to protein remote homology detection. - Bin Liu 014; Junjie Chen 004; Xiaolong Wang 001 (Bioinform., 2015)

repDNA: a Python package to generate various modes of feature vectors for DNA sequences by incorporating user-defined physicochemical properties and sequence-order effects. - Bin Liu 014; Fule Liu; Longyun Fang; Xiaolong Wang 001; Kuo-Chen Chou (Bioinform., 2015)

Word Embedding Composition for Data Imbalances in Sentiment and Emotion Classification. - Ruifeng Xu 001; Tao Chen 026; Yunqing Xia; Qin Lu 001; Bin Liu 014; Xuan Wang 002 (Cogn. Comput., 2015)

Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences. - Bin Liu 014; Fule Liu; Xiaolong Wang 001; Junjie Chen 004; Longyun Fang; Kuo-Chen Chou (Nucleic Acids Res., 2015)

The Visual Object Tracking VOT2016 Challenge Results. - Matej Kristan; Ales Leonardis; Jiri Matas; Michael Felsberg; Roman P. Pflugfelder; Luka Cehovin; Tomás Vojír; Gustav Häger; Alan Lukezic; Gustavo Fernández; Abhinav Gupta 001; Alfredo Petrosino; et al. (ECCV Workshops (2), 2016)

iEnhancer-2L: a two-layer predictor for identifying enhancers and their strength by pseudo k-tuple nucleotide composition. - Bin Liu 014; Longyun Fang; Ren Long; Xun Lan; Kuo-Chen Chou (Bioinform., 2016)

iDHS-EL: identifying DNase I hypersensitive sites by fusing three different modes of pseudo nucleotide composition into an ensemble learning framework. - Bin Liu 014; Ren Long; Kuo-Chen Chou (Bioinform., 2016)

iEnhancer-PsedeKNC: Identification of enhancers and their subgroups based on Pseudo degenerate kmer nucleotide composition. - Bin Liu 014 (Neurocomputing, 2016)

SOFM-Top: Protein Remote Homology Detection and Fold Recognition Based on Sequence-Order Frequency Matrix. - Junjie Chen 004; Mingyue Guo; Xiaolong Wang 001; Bin Liu 014 (ICIC (2), 2017)

Protein fold recognition based on sparse representation based classification. - Ke Yan 003; Yong Xu 001; Xiaozhao Fang; Chunhou Zheng 001; Bin Liu 014 (Artif. Intell. Medicine, 2017)

ProtDec-LTR2.0: an improved method for protein remote homology detection by combining pseudo protein and supervised Learning to Rank. - Junjie Chen 004; Mingyue Guo; Shumin Li; Bin Liu 014 (Bioinform., 2017)

iRSpot-EL: identify recombination spots with an ensemble learning approach. - Bin Liu 014; Shanyi Wang; Ren Long; Kuo-Chen Chou (Bioinform., 2017)

Protein remote homology detection based on bidirectional long short-term memory. - Shumin Li; Junjie Chen 004; Bin Liu 014 (BMC Bioinform., 2017)

A weakly supervised method for makeup-invariant face verification. - Yao Sun 004; Lejian Ren; Zhen Wei; Bin Liu 014; Yanlong Zhai; Si Liu 001 (Pattern Recognit., 2017)

A comprehensive review and comparison of different computational methods for protein remote homology detection. - Junjie Chen 004; Mingyue Guo; Xiaolong Wang 001; Bin Liu 014 (Briefings Bioinform., 2018)

iEnhancer-EL: identifying enhancers and their strength with ensemble learning approach. - Bin Liu 014; Kai Li; De-Shuang Huang; Kuo-Chen Chou (Bioinform., 2018)

iRO-3wPseKNC: identify DNA replication origins by three-window-based PseKNC. - Bin Liu 014; Fan Weng; De-Shuang Huang; Kuo-Chen Chou (Bioinform., 2018)

iPromoter-2L: a two-layer predictor for identifying promoters and their types by multi-window-based PseKNC. - Bin Liu 014; Fan Yang; De-Shuang Huang; Kuo-Chen Chou (Bioinform., 2018)

Composing Semantic Collage for Image Retargeting. - Si Liu 001; Zhen Wei; Yao Sun 004; Xinyu Ou; Junyu Lin; Bin Liu 014; Ming-Hsuan Yang 001 (IEEE Trans. Image Process., 2018)

Correlation Particle Filter for Visual Tracking. - Tianzhu Zhang 001; Si Liu 001; Changsheng Xu; Bin Liu 014; Ming-Hsuan Yang 001 (IEEE Trans. Image Process., 2018)

Three-Dimensional Attention-Based Deep Ranking Model for Video Highlight Detection. - Yifan Jiao; Zhetao Li; Shucheng Huang; Xiaoshan Yang; Bin Liu 014; Tianzhu Zhang 001 (IEEE Trans. Multim., 2018)

Protein Remote Homology Detection Based on Profiles. - Qing Liao 001; Mingyue Guo; Bin Liu 014 (IWBBIO (1), 2019)

iEsGene-ZCPseKNC: Identify Essential Genes Based on Z Curve Pseudo $k$ -Tuple Nucleotide Composition. - Jiahai Chen; Yongmin Liu; Qing Liao 001; Bin Liu 014 (IEEE Access, 2019)

iRBP-Motif-PSSM: Identification of RNA-Binding Proteins Based on Collaborative Learning. - Xin Gao; Donghua Wang; Jun Zhang 078; Qing Liao 001; Bin Liu 014 (IEEE Access, 2019)

ProtDec-LTR3.0: Protein Remote Homology Detection by Incorporating Profile-Based Features Into Learning to Rank. - Bin Liu 014; Yulin Zhu (IEEE Access, 2019)

BioSeq-Analysis: a platform for DNA, RNA and protein sequence analysis based on machine learning approaches. - Bin Liu 014 (Briefings Bioinform., 2019)

A comprehensive review and comparison of existing computational methods for intrinsically disordered protein and region prediction. - Yumeng Liu; Xiaolong Wang 001; Bin Liu 014 (Briefings Bioinform., 2019)

Protein fold recognition based on multi-view modeling. - Ke Yan 003; Xiaozhao Fang; Yong Xu 001; Bin Liu 014 (Bioinform., 2019)

Video Highlight Detection via Region-Based Deep Ranking Model. - Yifan Jiao; Tianzhu Zhang 001; Shucheng Huang; Bin Liu 014; Changsheng Xu (Int. J. Pattern Recognit. Artif. Intell., 2019)

Protein Remote Homology Detection and Fold Recognition Based on Sequence-Order Frequency Matrix. - Bin Liu 014; Junjie Chen 004; Mingyue Guo; Xiaolong Wang 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

ProtDet-CCH: Protein Remote Homology Detection by Combining Long Short-Term Memory and Ranking Methods. - Bin Liu 014; Shumin Li (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

HITS-PR-HHblits: protein remote homology detection by combining PageRank and Hyperlink-Induced Topic Search. - Bin Liu 014; Shuangyan Jiang; Quan Zou 001 (Briefings Bioinform., 2020)

DeepSVM-fold: protein fold recognition by combining support vector machines and pairwise sequence similarity scores generated by deep learning networks. - Bin Liu 014; Chen-Chen Li; Ke Yan 003 (Briefings Bioinform., 2020)

Fold-LTR-TCP: protein fold recognition based on triadic closure principle. - Bin Liu 014; Yulin Zhu; Ke Yan 003 (Briefings Bioinform., 2020)

iCircDA-MF: identification of circRNA-disease associations based on matrix factorization. - Hang Wei 005; Bin Liu 014 (Briefings Bioinform., 2020)

A comprehensive review and evaluation of computational methods for identifying protein complexes from protein-protein interaction networks. - Zhourun Wu; Qing Liao 001; Bin Liu 014 (Briefings Bioinform., 2020)

iPiDA-sHN: Identification of Piwi-interacting RNA-disease associations by selecting high quality negative samples. - Hang Wei 005; Yuxin Ding; Bin Liu 014 (Comput. Biol. Chem., 2020)

PreTP-EL: prediction of therapeutic peptides based on ensemble learning. - Yichen Guo; Ke Yan 003; Hongwu Lv; Bin Liu 014 (Briefings Bioinform., 2021)

PL-search: a profile-link-based search method for protein remote homology detection. - Xiaopeng Jin; Qing Liao 001; Bin Liu 014 (Briefings Bioinform., 2021)

FoldRec-C2C: protein fold recognition by combining cluster-to-cluster model and protein similarity network. - Jiangyi Shao; Ke Yan 003; Bin Liu 014 (Briefings Bioinform., 2021)

iPiDi-PUL: identifying Piwi-interacting RNA-disease associations based on positive unlabeled learning. - Hang Wei 005; Yong Xu 001; Bin Liu 014 (Briefings Bioinform., 2021)

idenPC-MIIP: identify protein complexes from weighted PPI networks using mutual important interacting partner relation. - Zhourun Wu; Qing Liao 001; Bin Liu 014 (Briefings Bioinform., 2021)

NCBRPred: predicting nucleic acid binding residues in proteins based on multilabel learning. - Jun Zhang 078; Qingcai Chen; Bin Liu 014 (Briefings Bioinform., 2021)

S2L-PSIBLAST: a supervised two-layer search framework based on PSI-BLAST for protein remote homology detection. - Xiaopeng Jin; Qing Liao 001; Bin Liu 014 (Bioinform., 2021)

SMI-BLAST: a novel supervised search framework based on PSI-BLAST for protein remote homology detection. - Xiaopeng Jin; Qing Liao 001; Hang Wei 005; Jun Zhang 078; Bin Liu 014 (Bioinform., 2021)

iCircDA-LTR: identification of circRNA-disease associations based on Learning to Rank. - Hang Wei 005; Yong Xu 001; Bin Liu 014 (Bioinform., 2021)

MLDH-Fold: Protein fold recognition based on multi-view low-rank modeling. - Ke Yan 003; Jie Wen 001; Yong Xu 001; Bin Liu 014 (Neurocomputing, 2021)

iLncRNAdis-FB: Identify lncRNA-Disease Associations by Fusing Biological Feature Blocks Through Deep Neural Network. - Hang Wei 005; Qing Liao 001; Bin Liu 014 (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Protein Fold Recognition by Combining Support Vector Machines and Pairwise Sequence Similarity Scores. - Ke Yan 003; Jie Wen 001; Jin-Xing Liu 001; Yong Xu 001; Bin Liu 014 (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Protein Fold Recognition Based on Auto-Weighted Multi-View Graph Embedding Learning Model. - Ke Yan 003; Jie Wen 001; Yong Xu 001; Bin Liu 014 (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

DeepDRBP-2L: A New Genome Annotation Predictor for Identifying DNA-Binding Proteins and RNA-Binding Proteins Using Convolutional Neural Network and Long Short-Term Memory. - Jun Zhang 078; Qingcai Chen; Bin Liu 014 (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

idenPC-CAP: Identify protein complexes from weighted RNA-protein heterogeneous interaction networks using co-assemble partner relation. - Zhourun Wu; Qing Liao 001; Shixi Fan; Bin Liu 014 (Briefings Bioinform., 2021)

Correction to: PHR-search: a search framework for protein remote homology detection based on the predicted protein hierarchical relationships. - Xiaopeng Jin; Xiaoling Luo 001; Bin Liu 014 (Briefings Bioinform., 2022)

PHR-search: a search framework for protein remote homology detection based on the predicted protein hierarchical relationships. - Xiaopeng Jin; Xiaoling Luo 001; Bin Liu 014 (Briefings Bioinform., 2022)

iDRNA-ITF: identifying DNA- and RNA-binding residues in proteins based on induction and transfer framework. - Ning Wang 054; Ke Yan 003; Jun Zhang 078; Bin Liu 014 (Briefings Bioinform., 2022)

idenMD-NRF: a ranking framework for miRNA-disease association identification. - Wenxiang Zhang; Hang Wei 005; Bin Liu 014 (Briefings Bioinform., 2022)

DeepIDP-2L: protein intrinsically disordered region prediction by combining convolutional attention network and hierarchical attention network. - Yi-Jun Tang; Yihe Pang; Bin Liu 014 (Bioinform., 2022)

TPpred-ATMV: therapeutic peptide prediction by adaptive multi-view tensor learning model. - Ke Yan 003; Hongwu Lv; Yichen Guo; Yongyong Chen; Hao Wu 066; Bin Liu 014 (Bioinform., 2022)

PreRBP-TL: prediction of species-specific RNA-binding proteins based on transfer learning. - Jun Zhang 078; Ke Yan 003; Qingcai Chen; Bin Liu 014 (Bioinform., 2022)

iDRBP-ECHF: Identifying DNA- and RNA-binding proteins based on extensible cubic hybrid framework. - Jiawei Feng; Ning Wang 054; Jun Zhang 078; Bin Liu 014 (Comput. Biol. Medicine, 2022)

AMPpred-EL: An effective antimicrobial peptide prediction model based on ensemble learning. - Hongwu Lv; Ke Yan 003; Yichen Guo; Quan Zou 001; Abd El-Latif Hesham; Bin Liu 014 (Comput. Biol. Medicine, 2022)

iLncDA-LTR: Identification of lncRNA-disease associations by learning to rank. - Hao Wu 066; Qi Liang; Wenxiang Zhang; Quan Zou 001; Abd El-Latif Hesham; Bin Liu 014 (Comput. Biol. Medicine, 2022)

SelfAT-Fold: Protein Fold Recognition Based on Residue-Based and Motif-Based Self-Attention Networks. - Yihe Pang; Bin Liu 014 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

ProtRe-CN: Protein Remote Homology Detection by Combining Classification Methods and Network Methods via Learning to Rank. - Jiangyi Shao; Junjie Chen 004; Bin Liu 014 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

IDRBP-PPCT: Identifying Nucleic Acid-Binding Proteins Based on Position-Specific Score Matrix and Position-Specific Frequency Matrix Cross Transformation. - Ning Wang 054; Jun Zhang 078; Bin Liu 014 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

iPiDA-GCN: Identification of piRNA-disease associations based on Graph Convolutional Network. - Jialu Hou; Hang Wei 005; Bin Liu 014 (PLoS Comput. Biol., 2022)

CFAGO: cross-fusion of network and attributes based on attention mechanism for protein function prediction. - Zhourun Wu; Mingyue Guo; Xiaopeng Jin; Junjie Chen 004; Bin Liu 014 (Bioinform., 2023)

SoccerNet 2023 Challenges Results. - Anthony Cioppa; Silvio Giancola; Vladimir Somers; Floriane Magera; Xin Zhou 024; Hassan Mkhallati; Adrien Deliège; Jan Held; Carlos Hinojosa; Amir M. Mansourian; Pierre Miralles; Olivier Barnich; et al. (CoRR, 2023)

iPiDA-SWGCN: Identification of piRNA-disease associations based on Supplementarily Weighted Graph Convolutional Network. - Jialu Hou; Hang Wei 005; Bin Liu 014 (PLoS Comput. Biol., 2023)

iDRBP-EL: Identifying DNA- and RNA- Binding Proteins Based on Hierarchical Ensemble Learning. - Ning Wang 054; Jun Zhang 078; Bin Liu 014 (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

PreTP-Stack: Prediction of Therapeutic Peptides Based on the Stacked Ensemble Learing. - Ke Yan 003; Hongwu Lv; Jie Wen 001; Yichen Guo; Yong Xu 001; Bin Liu 014 (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

iSnoDi-MDRF: Identifying snoRNA-Disease Associations Based on Multiple Biological Data by Ranking Framework. - Wenxiang Zhang; Bin Liu 014 (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

LncRNA-disease association identification using graph auto-encoder and learning to rank. - Qi Liang; Wenxiang Zhang; Hao Wu 066; Bin Liu 014 (Briefings Bioinform., 2023)

sAMPpred-GAT: prediction of antimicrobial peptide by graph attention network and predicted peptide structure. - Ke Yan 003; Hongwu Lv; Yichen Guo; Wei Peng; Bin Liu 014 (Bioinform., 2023)

PreTP-2L: identification of therapeutic peptides and their types using two-layer ensemble learning framework. - Ke Yan 003; Yichen Guo; Bin Liu 014 (Bioinform., 2023)

TransDFL: Identification of Disordered Flexible Linkers in Proteins by Transfer Learning. - Yihe Pang; Bin Liu 014 (Genom. Proteom. Bioinform., 2023)

DAmiRLocGNet: miRNA subcellular localization prediction by combining miRNA-disease associations and graph convolutional networks. - Tao Bai; Ke Yan 003; Bin Liu 014 (Briefings Bioinform., 2023)

PreHom-PCLM: protein remote homology detection by combing motifs and protein cubic language model. - Jiangyi Shao; Qi Zhang; Ke Yan 003; Bin Liu 014 (Briefings Bioinform., 2023)

TPpred-SC: multi-functional therapeutic peptide prediction based on multi-label supervised contrastive learning. - Ke Yan 003; Hongwu Lv; Jiangyi Shao; Shutao Chen; Bin Liu 014 (Sci. China Inf. Sci., 2024)

Multiple types of disease-associated RNAs identification for disease prognosis and therapy using heterogeneous graph learning. - Wenxiang Zhang; Hang Wei 005; Wenjing Zhang; Hao Wu 066; Bin Liu 014 (Sci. China Inf. Sci., 2024)

FusionEncoder: identification of intrinsically disordered regions based on multi-feature fusion. - Sicen Liu; Shutao Chen; Tao Bai; Bin Liu 014 (Bioinform., 2025)

iMFP-LG: Identify Novel Multi-functional Peptides Using Protein Language Models and Graph-based Deep Learning. - Jiawei Luo; Kejuan Zhao; Junjie Chen 004; Caihua Yang; Fuchuan Qu; Yumeng Liu; Xiaopeng Jin; Ke Yan 003; Yang Zhang 057; Bin Liu 014 (Genom. Proteom. Bioinform., 2025)

A Systemic Pipeline of Identifying lncRNA-Disease Associations to the Prognosis and Treatment of Hepatocellular Carcinoma. - Wenxiang Zhang; Ye Yuan 001; Hang Wei 005; Wenjing Zhang; Bin Liu 014 (IEEE Trans. Big Data, 2025)

ProFun-SOM: Protein Function Prediction for Specific Ontology Based on Multiple Sequence Alignment Reconstruction. - Jiangyi Shao; Junjie Chen 004; Bin Liu 014 (IEEE Trans. Neural Networks Learn. Syst., 2025)

Protein Language Pragmatic Analysis and Progressive Transfer Learning for Profiling Peptide-Protein Interactions. - Shutao Chen; Ke Yan 003; Xuelong Li 001; Bin Liu 014 (IEEE Trans. Neural Networks Learn. Syst., 2025)