Predicting three-dimensional genome organization with chromatin states. - Yifeng Qi; Bin Zhang 041 (PLoS Comput. Biol., 2019)

Characterizing chromatin folding coordinate and landscape with deep learning. - Wen Jun Xie; Yifeng Qi; Bin Zhang 041 (PLoS Comput. Biol., 2020)

On the role of transcription in positioning nucleosomes. - Zhongling Jiang; Bin Zhang 041 (PLoS Comput. Biol., 2021)

OpenABC enables flexible, simplified, and efficient GPU accelerated simulations of biomolecular condensates. - Shuming Liu 003; Cong Wang; Andrew P. Latham; Xinqiang Ding; Bin Zhang 041 (PLoS Comput. Biol., 2023)