StackEPI: identification of cell line-specific enhancer-promoter interactions based on stacking ensemble learning. - Yongxian Fan; Binchao Peng (BMC Bioinform., 2022)

iProL: identifying DNA promoters from sequence information based on Longformer pre-trained model. - Binchao Peng; Guicong Sun; Yongxian Fan (BMC Bioinform., 2024)