Measurement of steady-state kinetic parameters for DNA unwinding by the bacteriophage T4 Dda helicase: use of peptide nucleic acids to trap single-stranded DNA products of helicase reactions. - Bindu Nanduri; Robert L. Eoff; Alan J. Tackett; Kevin D. Raney (Nucleic Acids Res., 2001)

ProtQuant: a tool for the label-free quantification of MudPIT proteomics data. - Susan M. Bridges; G. Bryce Magee; Nan Wang 002; W. Paul Williams; Shane C. Burgess; Bindu Nanduri (BMC Bioinform., 2007)

Prediction of peptides observable by mass spectrometry applied at the experimental set level. - William S. Sanders; Susan M. Bridges; Fiona M. McCarthy; Bindu Nanduri; Shane C. Burgess (BMC Bioinform., 2007)

Integrating Evidence for Evaluation of Potential Novel Protein-coding Genes Using Bayesian Networks. - Nan Wang 002; Changhe Yuan; Shane C. Burgess; Bindu Nanduri; Mark L. Lawrence; Susan Bridges (BIOCOMP, 2008)

Comprehensive proteomic analysis of bovine spermatozoa of varying fertility rates and identification of biomarkers associated with fertility. - Divyaswetha Peddinti; Bindu Nanduri; Abdullah Kaya; Jean M. Feugang; Shane C. Burgess; Erdogan Memili (BMC Syst. Biol., 2008)

An automated proteomic data analysis workflow for mass spectrometry. - Ken Pendarvis; Ranjit Kumar; Shane C. Burgess; Bindu Nanduri (BMC Bioinform., 2009)

Gene Model Detection Using Mass Spectrometry. - Bindu Nanduri; Nan Wang 002; Mark L. Lawrence; Susan M. Bridges; Shane C. Burgess (Proteome Bioinformatics, 2010)

Analysis of Bovine Viral Diarrhea Viruses-infected monocytes: identification of cytopathic and non-cytopathic biotype differences. - Mais G. Ammari; Fiona M. McCarthy; Bindu Nanduri; Lesya M. Pinchuk (BMC Bioinform., 2010)

HPIDB - a unified resource for host-pathogen interactions. - Ranjit Kumar; Bindu Nanduri (BMC Bioinform., 2010)

GOModeler- A tool for hypothesis-testing of functional genomics datasets. - Prashanti Manda; McKinley G. Freeman; Susan M. Bridges; T. J. Jankun-Kelly; Bindu Nanduri; Fiona M. McCarthy; Shane C. Burgess (BMC Bioinform., 2010)

The Proteogenomic Mapping Tool. - William S. Sanders; Nan Wang 002; Susan M. Bridges; Brandon M. Malone; Yoginder S. Dandass; Fiona M. McCarthy; Bindu Nanduri; Mark L. Lawrence; Shane C. Burgess (BMC Bioinform., 2011)

TAAPP: Tiling Array Analysis Pipeline for Prokaryotes. - Ranjit Kumar; Shane C. Burgess; Mark L. Lawrence; Bindu Nanduri (Genom. Proteom. Bioinform., 2011)

Transcriptome profile of a bovine respiratory disease pathogen: Mannheimia haemolytica PHL213. - Joseph S. Reddy; Ranjit Kumar; James M. Watt; Mark L. Lawrence; Shane C. Burgess; Bindu Nanduri (BMC Bioinform., 2012)

Statistical Methods for Ambiguous Sequence Mappings. - Tamer Aldwairi; Bindu Nanduri; Mahalingam Ramkumar; Dilip Gautam; Michael Johnson; Andy D. Perkins (BCB, 2013)

No-boundary thinking in bioinformatics research. - Xiuzhen Huang; Barry Bruce; Alison Buchan; Clare Bates Congdon; Carole L. Cramer; Steven F. Jennings; Hongmei Jiang; Zenglu Li; Gail McClure; Rick McMullen; Jason H. Moore; Bindu Nanduri; et al. (BioData Min., 2013)

Big data - a 21st century science Maginot Line? No-boundary thinking: shifting from the big data paradigm. - Xiuzhen Huang; Steven F. Jennings; Barry Bruce; Alison Buchan; Liming Cai; Pengyin Chen; Carole L. Cramer; Weihua Guan; Uwe Hilgert; Hongmei Jiang; Zenglu Li; Gail McClure; et al. (BioData Min., 2015)

Information Theoretic Interestingness Measures for Cross-Ontology Data Mining in the Mouse Anatomy Ontology and the Gene Ontology. - Prashanti Manda; Fiona M. McCarthy; Bindu Nanduri; Susan M. Bridges (CoRR, 2015)

HPIDB 2.0: a curated database for host-pathogen interactions. - Mais G. Ammari; Cathy R. Gresham; Fiona M. McCarthy; Bindu Nanduri (Database J. Biol. Databases Curation, 2016)

Proceedings of the 2016 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. - Jonathan D. Wren; Inimary T. Toby; Huxiao Hong; Bindu Nanduri; Rakesh Kaundal; Mikhail G. Dozmorov; Shraddha Thakkar (BMC Bioinform., 2016)

Proceedings of the 2017 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. - Jonathan D. Wren; Mikhail G. Dozmorov; Inimary T. Toby; Bindu Nanduri; Ramin Homayouni; Prashanti Manda; Shraddha Thakkar (BMC Bioinform., 2017)

Proceedings of the 2018 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) conference. - Jonathan D. Wren; Robert J. Doerksen; Inimary T. Toby; Bindu Nanduri; Ramin Homayouni; Prashanti Manda; Shraddha Thakkar (BMC Bioinform., 2019)

No-boundary thinking: a viable solution to ethical data-driven AI in precision medicine. - Tayo Obafemi-Ajayi; Andy D. Perkins; Bindu Nanduri; Donald C. Wunsch II; James A. Foster; Joan Peckham (AI Ethics, 2022)

Editorial: Unleashing Innovation on Precision Public Health-Highlights From the MCBIOS and MAQC 2021 Joint Conference. - Ramin Homayouni; Huixiao Hong; Prashanti Manda; Bindu Nanduri; Inimary T. Toby (Frontiers Artif. Intell., 2022)

Towards Optimal Microbiome to Inhibit Multidrug Resistance. - Nisha Pillai; Bindu Nanduri; Michael J. Rothrock; Zhiqian Chen; Mahalingam Ramkumar (CIBCB, 2023)

Bayesian-Guided Generation of Synthetic Microbiomes with Minimized Pathogenicity. - Nisha Pillai; Bindu Nanduri; Michael J. Rothrock; Zhiqian Chen; Mahalingam Ramkumar (EMBC, 2024)

Leveraging Graph Neural Networks for MIC Prediction in Antimicrobial Resistance Studies. - Zonghan Zhang; Ramyasri Veerapaneni; Moses Ayoola; Athish Ram Das; Zhiqian Chen; Bindu Nanduri; Mahalingam Ramkumar (EMBC, 2024)

EndToEndML: An Open-Source End-to-End Pipeline for Machine Learning Applications. - Nisha Pillai; Athish Ram Das; Moses Ayoola; Ganga Gireesan; Bindu Nanduri; Mahalingam Ramkumar (ICICT, 2024)

Towards Interpreting Multi-Objective Feature Associations. - Nisha Pillai; Ganga Gireesan; Michael J. Rothrock; Bindu Nanduri; Zhiqian Chen; Mahalingam Ramkumar (SysCon, 2024)

Deep Sensitivity Analysis for Objective-Oriented Combinatorial Optimization. - Ganga Gireesan; Nisha Pillai; Michael J. Rothrock; Bindu Nanduri; Zhiqian Chen; Mahalingam Ramkumar (CoRR, 2024)

Towards Interpreting Multi-Objective Feature Associations. - Nisha Pillai; Ganga Gireesan; Michael J. Rothrock Jr.; Bindu Nanduri; Zhiqian Chen; Mahalingam Ramkumar (CoRR, 2024)

Bayesian-Guided Generation of Synthetic Microbiomes with Minimized Pathogenicity. - Nisha Pillai; Bindu Nanduri; Michael J. Rothrock Jr.; Zhiqian Chen; Mahalingam Ramkumar (CoRR, 2024)