Visually Testing Recursive Programs in Spreadsheet Languages. - Margaret M. Burnett; Bing Ren; Amy J. Ko; Curtis R. Cook; Gregg Rothermel (HCC, 2001)

Testing Homogeneous Spreadsheet Grids with the "What You See Is What You Test" Methodology. - Margaret M. Burnett; Andrei Sheretov; Bing Ren; Gregg Rothermel (IEEE Trans. Software Eng., 2002)

Application of Neural Network on Wave Impact Force Prediction. - Hongyu Zhang; Yongxue Wang; Bing Ren (ISNN (2), 2004)

Prediction of regulatory elements in mammalian genomes using chromatin signatures. - Kyoung-Jae Won; Iouri Chepelev; Bing Ren; Wei Wang 051 (BMC Bioinform., 2008)

ChromaSig: A Probabilistic Approach to Finding Common Chromatin Signatures in the Human Genome. - Gary Chung Hon; Bing Ren; Wei Wang 051 (PLoS Comput. Biol., 2008)

Discovery and Annotation of Functional Chromatin Signatures in the Human Genome. - Gary Chung Hon; Wei Wang 051; Bing Ren (PLoS Comput. Biol., 2009)

HiCNorm: removing biases in Hi-C data via Poisson regression. - Ming Hu 001; Ke Deng; Siddarth Selvaraj; Zhaohui S. Qin; Bing Ren; Jun S. Liu (Bioinform., 2012)

STAR: an integrated solution to management and visualization of sequencing data. - Tao Wang; Jie Liu; Li Shen; Julian Tonti-Filippini; Yun Zhu; Haiyang Jia; Ryan Lister; John W. Whitaker; Joseph R. Ecker; A. Harvey Millar; Bing Ren; Wei Wang 051 (Bioinform., 2013)

A high-resolution map of the three-dimensional chromatin interactome in human cells. - Fulai Jin; Yan Li; Jesse R. Dixon; Siddarth Selvaraj; Zhen Ye; Ahyoung Lee; Chia-An Yen; Anthony D. Schmitt; Celso A. Espinoza; Bing Ren (Nat., 2013)

Bayesian Inference of Spatial Organizations of Chromosomes. - Ming Hu 001; Ke Deng; Zhaohui S. Qin; Jesse R. Dixon; Siddarth Selvaraj; Jennifer Fang; Bing Ren; Jun S. Liu (PLoS Comput. Biol., 2013)

RFECS: A Random-Forest Based Algorithm for Enhancer Identification from Chromatin State. - Nisha Rajagopal; Wei Xie; Yan Li; Uli Wagner 002; Wei Wang 051; John A. Stamatoyannopoulos; Jason Ernst; Manolis Kellis; Bing Ren (PLoS Comput. Biol., 2013)

Topologically associating domains are stable units of replication-timing regulation Open. - Benjamin D. Pope; Tyrone Ryba; Vishnu Dileep; Feng Yue; Wei-Sheng Wu; Olgert Denas; Daniel L. Vera; Yanli Wang; R. Scott Hansen; Theresa K. Canfield; Robert E. Thurman; Yong Cheng; et al. (Nat., 2014)

3D chromosome rendering from Hi-C data using virtual reality. - Yixin Zhu; Siddarth Selvaraj; Philip P. Weber; Jennifer Fang; Jürgen P. Schulze; Bing Ren (Visualization and Data Analysis, 2015)

Integrative analysis of 111 reference human epigenomes Open. - Roadmap Epigenomics Consortium; Anshul Kundaje; Wouter Meuleman; Jason Ernst; Misha Bilenky; Angela Yen; Alireza Heravi Moussavi; Pouya Kheradpour; ZhiZhuo Zhang; Jianrong Wang; Michael J. Ziller; Viren Amin; et al. (Nat., 2015)

Chromatin architecture reorganization during stem cell differentiation Open. - Jesse R. Dixon; Inkyung Jung; Siddarth Selvaraj; Yin Shen; Jessica E. Antosiewicz-Bourget; Ahyoung Lee; Zhen Ye; Audrey Kim; Nisha Rajagopal; Wei Xie; Yarui Diao; Jing Liang; et al. (Nat., 2015)

HUGIn: Hi-C Unifying Genomic Interrogator. - Joshua S. Martin; Zheng Xu 010; Alex P. Reiner; Karen L. Mohlke; Patrick F. Sullivan; Bing Ren; Ming Hu 001; Yun Li (Bioinform., 2017)

Finding a Needle in the Haystack: Attention-Based Classification of High Resolution Microscopy Images. - Naofumi Tomita; Behnaz Abdollahi; Jason Wei; Bing Ren; Arief A. Suriawinata; Saeed Hassanpour (CoRR, 2018)

Generative Image Translation for Data Augmentation in Colorectal Histopathology Images. - Jerry W. Wei; Arief A. Suriawinata; Louis J. Vaickus; Bing Ren; Xiaoying Liu 002; Jason Wei; Saeed Hassanpour (ML4H@NeurIPS, 2019)

Comparing 3D Genome Organization in Multiple Species Using Phylo-HMRF. - Yang Yang 094; Yang Zhang 042; Bing Ren; Jesse R. Dixon; Jian Ma 004 (RECOMB, 2019)

Automated detection of celiac disease on duodenal biopsy slides: a deep learning approach. - Jason W. Wei; Jerry W. Wei; Christopher R. Jackson; Bing Ren; Arief A. Suriawinata; Saeed Hassanpour (CoRR, 2019)

Deep neural networks for automated classification of colorectal polyps on histopathology slides: A multi-institutional evaluation. - Jason W. Wei; Arief A. Suriawinata; Louis J. Vaickus; Bing Ren; Xiaoying Liu 002; Mikhail Lisovsky; Naofumi Tomita; Behnaz Abdollahi; Adam S. Kim; Dale C. Snover; John A. Baron; Elizabeth L. Barry; et al. (CoRR, 2019)

Parallel Distributed Logistic Regression for Vertical Federated Learning without Third-Party Coordinator. - Shengwen Yang; Bing Ren; Xuhui Zhou; Liping Liu (CoRR, 2019)

MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments. - Ivan Juric; Miao Yu; Armen Abnousi; Ramya Raviram; Rongxin Fang; Yuan Zhao; Yan-Xiao Zhang; Yunjiang Qiu; Yuchen Yang; Yun Li; Bing Ren; Ming Hu 001 (PLoS Comput. Biol., 2019)

Difficulty Translation in Histopathology Images. - Jerry W. Wei; Arief A. Suriawinata; Xiaoying Liu 002; Bing Ren; Mustafa Nasir-Moin; Naofumi Tomita; Jason Wei; Saeed Hassanpour (AIME, 2020)

Development and Evaluation of a Deep Neural Network for Histologic Classification of Renal Cell Carcinoma on Biopsy and Surgical Resection Slides. - Mengdan Zhu; Bing Ren; Ryland Richards; Matthew A. Suriawinata; Naofumi Tomita; Saeed Hassanpour (CoRR, 2020)

An ensemble imbalanced classification method based on model dynamic selection driven by data partition hybrid sampling. - Xin Gao; Bing Ren; Hao Zhang 070; Bohao Sun; Junliang Li; Jianhang Xu; Yang He; Kangsheng Li (Expert Syst. Appl., 2020)

The changing mouse embryo transcriptome at whole tissue and single-cell resolution. - Peng He; Brian A. Williams; Diane Trout; Georgi K. Marinov; Henry Amrhein; Libera Berghella; Say-Tar Goh; Ingrid Plajzer-Frick; Veena Afzal; Len A. Pennacchio; Diane E. Dickel; Axel Visel; et al. (Nat., 2020)

A Petri Dish for Histopathology Image Analysis. - Jerry W. Wei; Arief A. Suriawinata; Bing Ren; Xiaoying Liu 002; Mikhail Lisovsky; Louis J. Vaickus; Charles Brown; Michael Baker; Naofumi Tomita; Lorenzo Torresani; Jason Wei; Saeed Hassanpour (AIME, 2021)

Learn like a Pathologist: Curriculum Learning by Annotator Agreement for Histopathology Image Classification. - Jerry W. Wei; Arief A. Suriawinata; Bing Ren; Xiaoying Liu 002; Mikhail Lisovsky; Louis J. Vaickus; Charles Brown; Michael Baker; Mustafa Nasir-Moin; Naofumi Tomita; Lorenzo Torresani; Jason Wei; et al. (WACV, 2021)

A multiclass classification using one-versus-all approach with the differential partition sampling ensemble. - Xin Gao; Yang He; Mi Zhang; Xinping Diao; Xiao Jing; Bing Ren; Weijia Ji (Eng. Appl. Artif. Intell., 2021)

A Fast Space-Time Adaptive Processing Algorithm Based on Sparse Bayesian Learning for Airborne Radar. - Cheng Liu; Tong Wang 001; Shuguang Zhang; Bing Ren (Sensors, 2022)

Space-Time Adaptive Processing Based on Modified Sparse Learning via Iterative Minimization for Conformal Array Radar. - Bing Ren; Tong Wang (Sensors, 2022)

A Clutter Suppression Algorithm via Weighted ${ ell }_2{ rm{ - norm}}$ Penalty for Airborne Radar. - Cheng Liu; Tong Wang 001; Shuguang Zhang; Bing Ren (IEEE Signal Process. Lett., 2022)

Observer-Based Model-Free Adaptive Sliding Mode Predictive Control. - Bing Ren; Guangqing Bao (IEEE Access, 2023)

A Novel Fast Sparse Bayesian Learning STAP Algorithm for Conformal Array Radar. - Bing Ren; Tong Wang (Remote. Sens., 2023)

SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single-cell Hi-C data. - Lindsay Lee; Miao Yu; Xiaoqi Li 018; Chenxu Zhu; Yanxiao Zhang; Hongyu Yu; Ziyin Chen; Shreya Mishra; Bing Ren; Yun Li; Ming Hu 001 (Briefings Bioinform., 2023)

Automatic Modulation Recognition of Dual-Component Radar Signals Using ResSwinT-SwinT Network. - Bing Ren; Kah Chan Teh; Hongyang An; Erry Gunawan (IEEE Trans. Aerosp. Electron. Syst., 2023)

A 0.8-V-VIN 3.76-nW 23.1-ppm/°C Low Dropout Regulator Based on Flipped Voltage Follower with Embedded CMOS Voltage Reference. - Bing Ren; Chenchang Zhan; Fujun Liu (ICTA, 2024)

Deep Learning for Classification of Inflammatory Bowel Disease Activity in Whole Slide Images of Colonic Histopathology. - Amit Das; Tanmay Shukla; Naofumi Tomita; Ryland Richards; Laura Vidis; Bing Ren; Saeed Hassanpour (CoRR, 2024)

A Benchmark for Long-Form Medical Question Answering. - Pedram Hosseini; Jessica M. Sin; Bing Ren; Bryceton G. Thomas; Elnaz Nouri; Ali Farahanchi; Saeed Hassanpour (CoRR, 2024)

A Fast IAA-Based SR-STAP Method for Airborne Radar. - Shuguang Zhang; Tong Wang 001; Cheng Liu; Bing Ren (Remote. Sens., 2024)

OFDM Modulation Classification Using Cross-SKNet With Blind IQ Imbalance and Carrier Frequency Offset Compensation. - Bing Ren; Kah Chan Teh; Hongyang An; Erry Gunawan (IEEE Trans. Veh. Technol., 2024)

MIMO-OFDM Modulation Classification Using 4D2DConvNet for 5G Communications. - Bing Ren; Kah Chan Teh; Hongyang An; Erry Gunawan (IEEE Wirel. Commun. Lett., 2024)

A WCSPH-MSDEM model for combined rolling and sliding motions of complex-shaped blocks in an unsteady flow. - Sen Gao; Bing Ren; Pengzhi Lin; Ping Dong (J. Comput. Phys., 2025)

Cross-Modality Learning for Predicting IHC Biomarkers from H&E-Stained Whole-Slide Images. - Amit Das; Naofumi Tomita; Kyle J. Syme; Weijie Ma; Paige O'Connor; Kristin N. Corbett; Bing Ren; Xiaoying Liu 002; Saeed Hassanpour (CoRR, 2025)

CPAA: Self-Supervised Cross-View Prediction With Automatic Augmentation for OFDM Modulation Classification. - Bing Ren; Zhengyang Su; Kah Chan Teh; Hongyang An; Erry Gunawan; Alex C. Kot (IEEE Trans. Veh. Technol., 2025)