Three Is a Magic Number: Virtual Cameras for Dynamic Triadic Game Dialogue. - Bingjie Xue; Stefan Rank (ICIDS, 2014)

KinPred: A unified and sustainable approach for harnessing proteome-level human kinase-substrate predictions. - Bingjie Xue; Benjamin Jordan; Saqib Rizvi; Kristen M. Naegle (PLoS Comput. Biol., 2021)

excluderanges: exclusion sets for T2T-CHM13, GRCm39, and other genome assemblies. - Jonathan D. Ogata; Wancen Mu; Eric S. Davis; Bingjie Xue; J. Chuck Harrell; Nathan C. Sheffield; Douglas H. Phanstiel; Michael I. Love; Mikhail G. Dozmorov (Bioinform., 2023)