Sorting Signed Permutations by Fixed-length Reversals. - Xingqin Qi; Guojun Li; Jichang Wu; Bingqiang Liu (Int. J. Found. Comput. Sci., 2006)

An integrated toolkit for accurate prediction and analysis of cis-regulatory motifs at a genome scale. - Qin Ma 003; Bingqiang Liu; Chuan Zhou 009; Yanbin Yin; Guojun Li; Ying Xu 001 (Bioinform., 2013)

A note on Rainbow Matchings. - Guanghui Wang 002; Bingqiang Liu; Guizhen Liu (Discret. Math. Algorithms Appl., 2013)

DMINDA: an integrated web server for DNA motif identification and analyses. - Qin Ma 003; Hanyuan Zhang; Xizeng Mao; Chuan Zhou 009; Bingqiang Liu; Xin Chen; Ying Xu 001 (Nucleic Acids Res., 2014)

Revisiting operons: an analysis of the landscape of transcriptional units in E. coli. - Xizeng Mao; Qin Ma 003; Bingqiang Liu; Xin Chen; Hanyuan Zhang; Ying Xu 001 (BMC Bioinform., 2015)

Neighbor sum distinguishing total colorings of planar graphs. - Hualong Li; Laihao Ding; Bingqiang Liu; Guanghui Wang 002 (J. Comb. Optim., 2015)

PGrey rough influence diagrams method and its medical application. - Haiqing Hu; Bingqiang Liu; Tao Shen 003 (ICNC-FSKD, 2016)

Intelligent reasoning and management decision making with grey rough influence diagrams. - Haiqing Hu; Bingqiang Liu; Tao Shen 003 (Int. J. Intell. Comput. Cybern., 2016)

BinPacker: Packing-Based De Novo Transcriptome Assembly from RNA-seq Data. - Juntao Liu; Guojun Li; Zheng Chang; Ting Yu 010; Bingqiang Liu; Rick McMullen; Pengyin Chen; Xiuzhen Huang (PLoS Comput. Biol., 2016)

An algorithmic perspective of de novo cis-regulatory motif finding based on ChIP-seq data. - Bingqiang Liu; Jinyu Yang; Yang Li 089; Adam McDermaid; Qin Ma 003 (Briefings Bioinform., 2018)

MiMod: A New Algorithm for Mining Biological Network Modules. - Yang Li 089; Bingqiang Liu; Jing Li; Guojun Li (IEEE Access, 2019)

Interpretation of differential gene expression results of RNA-seq data: review and integration. - Adam McDermaid; Brandon Monier; Jing Zhao; Bingqiang Liu; Qin Ma 003 (Briefings Bioinform., 2019)

MetaQUBIC: a computational pipeline for gene-level functional profiling of metagenome and metatranscriptome. - Anjun Ma; Minxuan Sun; Adam McDermaid; Bingqiang Liu; Qin Ma 003 (Bioinform., 2019)

Protein-protein interaction sites prediction by ensemble random forests with synthetic minority oversampling technique. - Xiaoying Wang; Bin Yu 007; Anjun Ma; Cheng Chen; Bingqiang Liu; Qin Ma 003 (Bioinform., 2019)

Computational Prediction of Sigma-54 Promoters in Bacterial Genomes by Integrating Motif Finding and Machine Learning Strategies. - Bingqiang Liu; Ling Han; Xiangrong Liu; Jichang Wu; Qin Ma 003 (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

QUBIC2: a novel and robust biclustering algorithm for analyses and interpretation of large-scale RNA-Seq data. - Juan Xie; Anjun Ma; Yu Zhang; Bingqiang Liu; Sha Cao; Cankun Wang; Jennifer Xu; Chi Zhang 021; Qin Ma 003 (Bioinform., 2020)

GTB-PPI: Predict Protein-protein Interactions Based on L1-regularized Logistic Regression and Gradient Tree Boosting. - Bin Yu 007; Cheng Chen; Hongyan Zhou; Bingqiang Liu; Qin Ma 003 (Genom. Proteom. Bioinform., 2020)

IRIS3: integrated cell-type-specific regulon inference server from single-cell RNA-Seq. - Anjun Ma; Cankun Wang; Yuzhou Chang; Faith H. Brennan; Adam McDermaid; Bingqiang Liu; Chi Zhang 021; Phillip G. Popovich; Qin Ma 003 (Nucleic Acids Res., 2020)

A Reconfigurable Matrix Multiplication Coprocessor with High Area and Energy Efficiency for Visual Intelligent and Autonomous Mobile Robots. - Jipeng Wang; Yi Zhan; Zhaoxu Wang; Zixuan Peng; Jiarui Xu; Bingqiang Liu; Guoyi Yu; Fengwei An; Chao Wang 096; Xuecheng Zou (A-SSCC, 2021)

An energy-efficient and high-PSNR image denoising pre-processor based on optimized non-local means algorithm for real-time FHD video applications. - Sihang Jiang; Bingqiang Liu; Shangcheng Xu; Qian Liu; Chao Wang 096; Zhaoxia Zheng (ICTA, 2021)

A Reconfigurable Area and Energy Efficient Hardware Accelerator of Five High-order Operators for Vision Sensor Based Robot Systems. - Qianjin Wang; Yi Zhan; Bingqiang Liu; Jiajun Wu 006; Youhua Shi; Guoyi Yu; Chao Wang 096 (ICTA, 2021)

Low Computation and High Efficiency Sobel Edge Detector for Robot Vision. - Fei Liu; Jipeng Wang; Bingqiang Liu; Run Min; Guoyi Yu; Fengwei An; Chao Wang 096 (RCAR, 2021)

The functional determinants in the organization of bacterial genomes. - Zhaoqian Liu; Jingtong Feng; Bin Yu 007; Qin Ma 003; Bingqiang Liu (Briefings Bioinform., 2021)

Network analyses in microbiome based on high-throughput multi-omics data. - Zhaoqian Liu; Anjun Ma; Ewy A. Mathé; Marlena Merling; Qin Ma 003; Bingqiang Liu (Briefings Bioinform., 2021)

A novel computational framework for genome-scale alternative transcription units prediction. - Qi Wang; Zhaoqian Liu; Bo Yan; Wen-Chi Chou; Laurence Ettwiller; Qin Ma 003; Bingqiang Liu (Briefings Bioinform., 2021)

An Energy-Efficient Deep Belief Network Processor Based on Heterogeneous Multi-Core Architecture With Transposable Memory and On-Chip Learning. - Jiajun Wu 006; Xuan Huang; Le Yang; Jipeng Wang; Bingqiang Liu; Ziyuan Wen; Juhui Li; Guoyi Yu; Kwen-Siong Chong; Chao Wang 096 (IEEE J. Emerg. Sel. Topics Circuits Syst., 2021)

Prediction of protein-protein interactions based on elastic net and deep forest. - Bin Yu 007; Cheng Chen; Xiaolin Wang; Zhaomin Yu; Anjun Ma; Bingqiang Liu (Expert Syst. Appl., 2021)

Energy-Efficient Intelligent Pulmonary Auscultation for Post COVID-19 Era Wearable Monitoring Enabled by Two-Stage Hybrid Neural Network. - Bingqiang Liu; Ziyuan Wen; Hongling Zhu; Jinsheng Lai; Jiajun Wu 006; Heng Ping; Wenqing Liu; Guoyi Yu; Jianmin Zhang; Zuozhu Liu; Hesong Zeng; Chao Wang 096 (ISCAS, 2022)

Automatic pulmonary auscultation grading diagnosis of Coronavirus Disease 2019 in China with artificial intelligence algorithms: A cohort study. - Hongling Zhu; Jinsheng Lai; Bingqiang Liu; Ziyuan Wen; Yulong Xiong; Honglin Li; Yuhua Zhou; Qiuyun Fu; Guoyi Yu; Xiaoxiang Yan; Xiaoyun Yang; Jianmin Zhang; et al. (Comput. Methods Programs Biomed., 2022)

Entropy Sources Based on Silicon Chips: True Random Number Generator and Physical Unclonable Function. - Yuan Cao 003; Wanyi Liu; Lan Qin; Bingqiang Liu; Shuai Chen; Jing Ye 001; Xianzhao Xia; Chao Wang 096 (Entropy, 2022)

Efficient Hardware Accelerator Design of Non-Linear Optimization Correlative Scan Matching Algorithm in 2D LiDAR SLAM for Mobile Robots. - Ao Hu; Guoyi Yu; Qianjin Wang; Dongxiao Han; Shilun Zhao; Bingqiang Liu; Yu Yu; Yuwen Li; Chao Wang 096; Xuecheng Zou (Sensors, 2022)

Design and Analysis of Area and Energy Efficient Reconfigurable Cryptographic Accelerator for Securing IoT Devices. - Xvpeng Zhang; Bingqiang Liu; Yaqi Zhao; Xiaoyu Hu; Zixuan Shen; Zhaoxia Zheng; Zhenglin Liu; Kwen-Siong Chong; Guoyi Yu; Chao Wang 096; Xuecheng Zou (Sensors, 2022)

An Energy-Efficient SIFT Based Feature Extraction Accelerator for High Frame-Rate Video Applications. - Bingqiang Liu; Zehua Yin; Xvpeng Zhang; Yi Zhan; Xiaofeng Hu; Guoyi Yu; Yuanjin Zheng; Chao Wang 096; Xuecheng Zou (IEEE Trans. Circuits Syst. I Regul. Pap., 2022)

An Energy-Efficient, Resource-Efficient and High Frame-Rate End-to-End Pedestrian Detector Using HOG-SVM for Intelligent Edge Devices. - Jipeng Wang; Jianhui Song; Bingqiang Liu; Zixuan Shen; Yu Jiang; Fengwei An; Chao Wang 096; Jiang Tang (IECON, 2023)

Inference of disease-associated microbial gene modules based on metagenomic and metatranscriptomic data. - Zhaoqian Liu; Qi Wang; Anjun Ma; Shaohong Feng; Dongjun Chung; Jing Zhao; Qin Ma 003; Bingqiang Liu (Comput. Biol. Medicine, 2023)

A low-hardware-overhead, high-energy-efficiency, and end-to-end CNN-based feature extraction accelerator for mobile visual SLAM. - Zehua Yin; Bingqiang Liu; Jipeng Wang; Zixuan Shen; Guangyao Li; Chao Wang (APCCAS, 2024)

An Energy-efficient and Dual-mode AI Accelerator for Wearable Lung Sound Monitoring. - Keyi Yang; Bingqiang Liu; Zirui Huang; Heng Ping; Ziyuan Wen; Zixuan Shen; Chengjun Huang; Chao Wang (BioCAS, 2024)

Live Demonstration: A High-frame-rate and Energy-efficient SIFT Feature Extraction Accelerator Based SoC Design for AMR Applications. - Zhenhui Duan; Bingqiang Liu; Zehua Yin; Jipeng Wang; Zixuan Shen; Xupeng Zhang; Zaisheng He; Chao Wang (ISCAS, 2024)

Live Demonstration: A Reconfigurable, Energy-efficient and High-frame-rate EKF-SLAM Accelerator Based SoC Design for Autonomous Mobile Robot Applications. - Dingcheng Jiang; Bingqiang Liu; Jipeng Wang; Ao Hu; Yequan Zhao; Minjie Bao; Zhendong Fan; Zixuan Shen; Ke Wang; Chao Wang (ISCAS, 2024)

Enhancer-driven gene regulatory networks inference from single-cell RNA-seq and ATAC-seq data. - Yang Li 089; Anjun Ma; Yizhong Wang; Qi Guo; Cankun Wang; Hongjun Fu; Bingqiang Liu; Qin Ma 003 (Briefings Bioinform., 2024)

CEMIG: prediction of the cis-regulatory motif using the de Bruijn graph from ATAC-seq. - Yizhong Wang; Yang Li 089; Cankun Wang; Chan-Wang Jerry Lio; Qin Ma 003; Bingqiang Liu (Briefings Bioinform., 2024)

A weighted two-stage sequence alignment framework to identify motifs from ChIP-exo data. - Yang Li 089; Yizhong Wang; Cankun Wang; Anjun Ma; Qin Ma 003; Bingqiang Liu (Patterns, 2024)

Live Demonstration: An Area and Energy Efficient Reconfigurable Cryptographic Accelerator Based SoC Design for Securing IoT Devices. - Xvpeng Zhang; Bingqiang Liu; Lingyun Hu; Zixuan Shen; Zaisheng He; Dengke Xu; Bah-Hwee Gwee; Chao Wang (ISCAS, 2025)