Boosting based text and non-text region classification. - Binqing Xie; Gady Agam (DRR, 2011)

Prediction of candidate genes for neuropsychiatric disorders using feature-based enrichment. - Bingqing Xie; Gady Agam; Dinanath Sulakhe; Natalia Maltsev; Bhadrachalam Chitturi; T. Conrad Gilliam (BCB, 2012)

Ensemble methods with simple features for document zone classification. - Tayo Obafemi-Ajayi; Gady Agam; Bingqing Xie (DRR, 2012)

Conditional Random Field for Candidate Gene Prioritization. - Bingqing Xie; Gady Agam; Natalia Maltsev; T. Conrad Gilliam (BCB, 2013)

A machine learning based lecture video segmentation and indexing algorithm. - Di Ma; Bingqing Xie; Gady Agam (DRR, 2014)

Lynx: a database and knowledge extraction engine for integrative medicine. - Dinanath Sulakhe; Sandhya Balasubramanian; Bingqing Xie; Bo Feng; Andrew Taylor; Sheng Wang 001; Eduardo Berrocal; Utpal J. Dave; Jinbo Xu; Daniela Börnigen; T. Conrad Gilliam; Natalia Maltsev (Nucleic Acids Res., 2014)

Lynx web services for annotations and systems analysis of multi-gene disorders. - Dinanath Sulakhe; Andrew Taylor; Sandhya Balasubramanian; Bo Feng; Bingqing Xie; Daniela Börnigen; Utpal J. Dave; Ian T. Foster; T. Conrad Gilliam; Natalia Maltsev (Nucleic Acids Res., 2014)

Disease Gene Prioritization Using Network and Feature. - Bingqing Xie; Gady Agam; Sandhya Balasubramanian; Jinbo Xu; T. Conrad Gilliam; Natalia Maltsev; Daniela Börnigen (J. Comput. Biol., 2015)

Lynx: a knowledge base and an analytical workbench for integrative medicine. - Dinanath Sulakhe; Bingqing Xie; Andrew Taylor; Mark D'Souza; Sandhya Balasubramanian; Somaye Hashemifar; Steven White; Utpal J. Dave; Gady Agam; Jinbo Xu; Sheng Wang 001; T. Conrad Gilliam; et al. (Nucleic Acids Res., 2016)

DEEPre: sequence-based enzyme EC number prediction by deep learning. - Yu Li 006; Sheng Wang 001; Ramzan Umarov; Bingqing Xie; Ming Fan 003; Lihua Li 002; Xin Gao 001 (Bioinform., 2018)

Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources. - Dinanath Sulakhe; Mark D'Souza; Sheng Wang 001; Sandhya Balasubramanian; Prashanth Athri; Bingqing Xie; Stefan Canzar; Gady Agam; T. Conrad Gilliam; Natalia Maltsev (Briefings Bioinform., 2019)

Image-domain material decomposition in spectral photon-counting CT for medical applications. (La décomposition de matériaux dans la tomographie spectrale (sCT - spectral computed tomography) par rayons X dans le domaine de l'image). - Bingqing Xie (2020)

Improved Image Reconstruction Using Multi-Energy Information in Spectral Photon-Counting CT. - Pei Niu; Lihuiwang 002; Bingqing Xie; Marc C. Robini; Loïc Boussel; Phillippe Douek; Yuemin Zhu; Feng Yang 010 (IEEE Access, 2021)

Super-Energy-Resolution Material Decomposition for Spectral Photon-Counting CT Using Pixel-Wise Learning. - Bingqing Xie; Yuemin Zhu; Pei Niu; Ting Su; Feng Yang 010; Lihui Wang 002; Pierre-Antoine Rodesch; Loïc Boussel; Philippe Douek; Philippe Duvauchelle (IEEE Access, 2021)

Recent Advances on Functional Nucleic-Acid Biosensors. - Xinhong Yu; Shiqi Zhang; Wenqiang Guo; Boxi Li; Yang Yang; Bingqing Xie; Ke Li; Li Zhang 118 (Sensors, 2021)

Identification of Subway Tunnel Vibration Signal Based on Fiber Grating Array. - Mingyu Teng; Linfeng Hu; Shengzhuang Dou; Jinjun Pan; Bingqing Xie (ICITEE, 2022)

Iterative refinement and goal articulation to optimize large language models for clinical information extraction. - David Hein; Alana Christie; Michael J. Holcomb; Bingqing Xie; Aj Jain; Joseph Vento; Dinesh Rakheja; Ameer Hamza Shakur; Scott Christley; Lindsay G. Cowell; James Brugarolas; Andrew R. Jamieson; et al. (npj Digit. Medicine, 2025)