A suffix tree approach to the interpretation of tandem mass spectra: applications to peptides of non-specific digestion and post-translational modifications. - Bingwen Lu; Ting Chen (ECCB, 2003)

A Suboptimal Algorithm for De Novo Peptide Sequencing via Tandem Mass Spectrometry. - Bingwen Lu; Ting Chen (J. Comput. Biol., 2003)

Constrained De Novo Sequencing of Peptides with Application to Conotoxins. - Swapnil Bhatia; Yong J. Kil; Beatrix Ueberheide; Brian T. Chait; Lemmuel Lara Tayo; Lourdes J. Cruz; Bingwen Lu; John R. Yates III; Marshall W. Bern (RECOMB, 2011)