Computational inference of physical spatial organization of eukaryotic genomes. - Bingxiang Xu; Zhihua Zhang 007 (Quant. Biol., 2016)

IC4R-2.0: Rice Genome Reannotation Using Massive RNA-seq Data. - Jian Sang; Dong Zou; Zhennan Wang; Fan Wang; Yuansheng Zhang; Lin Xia; Zhaohua Li; Lina Ma; Mengwei Li; Bingxiang Xu; Xiaonan Liu; Shuangyang Wu; et al. (Genom. Proteom. Bioinform., 2020)

DeNOPA: decoding nucleosome positions sensitively with sparse ATAC-seq data. - Bingxiang Xu; Xiaoli Li; Xiaomeng Gao; Yan Jia; Jing Liu; Feifei Li; Zhihua Zhang 007 (Briefings Bioinform., 2022)