System Stability Via Stepping Optimal Control: Theory and Applications. - Binhua Tang; Li He; Sushing Chen; Bairong Shen (EPIA Workshops, 2007)

Model-Based Identification and Adaptive Control of the Core Module in a Typical Cell Cycle Pathway via Network and System Control Theories. - Binhua Tang; Li He; Qing Jing; Bairong Shen (Adv. Complex Syst., 2009)

A weighted structural model clustering approach for identifying and analyzing core genetic regulatory modules. - Binhua Tang; Su-Shing Chen (BIBM Workshops, 2010)

Computational inference and analysis of genetic regulatory networks via a supervised combinatorial-optimization pattern. - Binhua Tang; Xuechen Wu; Ge Tan; Su-Shing Chen; Qing Jing; Bairong Shen (BMC Syst. Biol., 2010)

Integrative identification of core genetic regulatory modules via a structural model-based clustering method. - Binhua Tang; Sushing Chen; Victor X. Jin (Int. J. Comput. Biol. Drug Des., 2011)

Toward optimization-oriented NGS peak alignment within the context of Precision Medicine Initiative. - Binhua Tang (BIBM, 2016)

Power Spectrum-Based Genomic Feature Extraction from High-Throughput ChIP-seq Sequences. - Binhua Tang; Yufan Zhou; Victor X. Jin (ICIC (1), 2016)

An Improved Variational Autoencoder-Based Clustering Method for Pan-Cancer Diagnosis and Subtyping. - Binhua Tang; Jiafei Nie (ICIC (3), 2023)

A Novel GCN-Based Cell Annotation Method for Single-Cell RNA Sequencing Data. - Binhua Tang; Guowei Cheng (CISP-BMEI, 2024)

scFTAT: a novel cell annotation method integrating FFT and transformer. - Binhua Tang; Yiyao Chen (BMC Bioinform., 2025)