Prediction of lipid posttranslational modifications and localization signals from protein sequences: big-, NMT and PTS1. - Frank Eisenhaber; Birgit Eisenhaber; Werner Kubina; Sebastian Maurer-Stroh; Georg Neuberger; Georg Schneider 001; Michael Wildpaner (Nucleic Acids Res., 2003)

TM or not TM: transmembrane protein prediction with low false positive rate using DAS-TMfilter. - Miklós Cserzo; Frank Eisenhaber; Birgit Eisenhaber; István Simon (Bioinform., 2004)

Proteins with two SUMO-like domains in chromatin-associated complexes: The RENi (Rad60-Esc2-NIP45) family. - Maria Novatchkova; Andreas Bachmair; Birgit Eisenhaber; Frank Eisenhaber (BMC Bioinform., 2005)

ANNIE: integrated de novo protein sequence annotation. - Hong Sain Ooi; Chia Yee Kwoh; Michael Wildpaner; Fernanda L. Sirota; Birgit Eisenhaber; Sebastian Maurer-Stroh; Wing-Cheong Wong; Alexander Schleiffer; Frank Eisenhaber; Georg Schneider 001 (Nucleic Acids Res., 2009)

Beware of Moving targets: Reference proteome Content Fluctuates substantially over the Years. - Fernanda L. Sirota; Arsen O. Batagov; Georg Schneider 001; Birgit Eisenhaber; Frank Eisenhaber; Sebastian Maurer-Stroh (J. Bioinform. Comput. Biol., 2012)

How bioinformatics influences health informatics: usage of biomolecular sequences, expression profiles and automated microscopic image analyses for clinical needs and public health. - Vladimir A. Kuznetsov; Hwee Kuan Lee; Sebastian Maurer-Stroh; Maria Judit Molnár; Sándor Pongor; Birgit Eisenhaber; Frank Eisenhaber (Health Inf. Sci. Syst., 2013)

SPACER: server for predicting allosteric communication and effects of regulation. - Alexander Goncearenco; Simon Mitternacht; Taipang Yong; Birgit Eisenhaber; Frank Eisenhaber; Igor N. Berezovsky (Nucleic Acids Res., 2013)

On the necessity of dissecting sequence similarity scores into segment-specific contributions for inferring protein homology, function prediction and annotation. - Wing-Cheong Wong; Sebastian Maurer-Stroh; Birgit Eisenhaber; Frank Eisenhaber (BMC Bioinform., 2014)

HPMV: Human protein mutation viewer - relating sequence mutations to protein sequence architecture and function changes. - Westley Arthur Sherman; Durga Kuchibhatla; Vachiranee Limviphuvadh; Sebastian Maurer-Stroh; Birgit Eisenhaber; Frank Eisenhaber (J. Bioinform. Comput. Biol., 2015)