STELLAR: fast and exact local alignments. - Birte Kehr; David Weese; Knut Reinert (BMC Bioinform., 2011)

Determination of Glycan Structure from Tandem Mass Spectra. - Sebastian Böcker; Birte Kehr; Florian Rasche (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Hidden Breakpoints in Genome Alignments. - Birte Kehr; Knut Reinert; Aaron E. Darling (WABI, 2012)

NetCoffee: a fast and accurate global alignment approach to identify functionally conserved proteins in multiple networks. - Jialu Hu; Birte Kehr; Knut Reinert (Bioinform., 2014)

Genome alignment with graph data structures: a comparison. - Birte Kehr; Kathrin Trappe; Manuel Holtgrewe; Knut Reinert (BMC Bioinform., 2014)

Contributions to computing and modeling multiple whole-genome alignments. - Birte Kehr (2014)

chopBAI: BAM index reduction solves I/O bottlenecks in the joint analysis of large sequencing cohorts. - Birte Kehr; Páll Melsted (Bioinform., 2016)

PopIns: population-scale detection of novel sequence insertions. - Birte Kehr; Páll Melsted; Bjarni V. Halldórsson (Bioinform., 2016)

popSTR: population-scale detection of STR variants. - Snædís Kristmundsdóttir; Brynja D. Sigurpálsdóttir; Birte Kehr; Bjarni V. Halldórsson (Bioinform., 2017)

GAMIBHEAR: whole-genome haplotype reconstruction from Genome Architecture Mapping data. - Julia Markowski; Rieke Kempfer; Alexander Kukalev; Ibai Irastorza-Azcarate; Gesa Loof; Birte Kehr; Ana Pombo; Sven Rahmann; Roland F. Schwarz (Bioinform., 2021)

The Collaborative Research Center FONDA. - Ulf Leser; Marcus Hilbrich; Claudia Draxl; Peter Eisert; Lars Grunske; Patrick Hostert; Dagmar Kainmüller; Odej Kao; Birte Kehr; Timo Kehrer; Christoph Koch 001; Volker Markl; et al. (Datenbank-Spektrum, 2021)

Population-scale detection of non-reference sequence variants using colored de Bruijn graphs. - Thomas Krannich; W. Timothy J. White; Sebastian Niehus; Guillaume Holley; Bjarni V. Halldórsson; Birte Kehr (Bioinform., 2022)

From Program Chains to Exploratory Workflows: PopinSnake for Genomic Insertion Detection. - Kedi Cao; Nourhan Elfaramawy; Matthias Weidlich 001; Birte Kehr (e-Science, 2023)

How do users design scientific workflows? The Case of Snakemake. - Sebastian Pohl; Nourhan Elfaramawy; Kedi Cao; Birte Kehr; Matthias Weidlich 001 (CoRR, 2023)

How Do Users Design Scientific Workflows? The Case of Snakemake and Nextflow. - Sebastian Pohl; Nourhan Elfaramawy; Artur Miling; Kedi Cao; Birte Kehr; Matthias Weidlich 001 (SSDBM, 2024)

GGTyper: genotyping complex structural variants using short-read sequencing data. - Tim Mirus; Robert Lohmayer; Clementine Döhring; Bjarni V. Halldórsson; Birte Kehr (Bioinform., 2024)