Optimal Fuzzy Model Construction with Statistical Information using Genetic Algorithm - Md. Amjad Hossain; Pintu Chandra Shill; Bishnu Sarker; Kazuyuki Murase (CoRR, 2012)

Exploiting Complex Protein Domain Networks for Protein Function Annotation. - Bishnu Sarker; David W. Ritchie; Sabeur Aridhi (COMPLEX NETWORKS (2), 2018)

Functional Annotation of Proteins using Domain Embedding based Sequence Classification. - Bishnu Sarker; David W. Ritchie; Sabeur Aridhi (KDIR, 2019)

Graph Based Automatic Protein Function Annotation Improved by Semantic Similarity. - Bishnu Sarker; Navya Khare; Marie-Dominique Devignes; Sabeur Aridhi (IWBBIO, 2020)

GrAPFI: predicting enzymatic function of proteins from domain similarity graphs. - Bishnu Sarker; David W. Ritchie; Sabeur Aridhi (BMC Bioinform., 2020)

On Graph-Based Approaches for Protein Function Annotation and Knowledge Discovery. (Approches à base de graphes pour l'annotation de la fonction des protéines et la découverte des connaissances). - Bishnu Sarker (2021)

A Semi-supervised Graph Deep Neural Network for Automatic Protein Function Annotation. - Akrem Sellami; Bishnu Sarker; Salvatore Tabbone; Marie-Dominique Devignes; Sabeur Aridhi (IWBBIO (2), 2022)

Improving automatic GO annotation with semantic similarity. - Bishnu Sarker; Navya Khare; Marie-Dominique Devignes; Sabeur Aridhi (BMC Bioinform., 2022)

On the design of a similarity function for sparse binary data with application on protein function annotation. - Marcelo B. A. Veras; Bishnu Sarker; Sabeur Aridhi; João P. P. Gomes; José A. F. de Macêdo; Engelbert Mephu Nguifo; Marie-Dominique Devignes; Malika Smaïl-Tabbone (Knowl. Based Syst., 2022)

MetaLLM: Residue-Wise Metal Ion Prediction Using Deep Transformer Model. - Fairuz Shadmani Shishir; Bishnu Sarker; Farzana Rahman; Sumaiya Shomaji (IWBBIO (2), 2023)