Genomic Region Operation Kit for Flexible Processing of Deep Sequencing Data. - Kristian Ovaska; Lauri Lyly; Biswajyoti Sahu; Olli A. Jänne; Sampsa Hautaniemi (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

PeakXus: comprehensive transcription factor binding site discovery from ChIP-Nexus and ChIP-Exo experiments. - Tuomo Hartonen; Biswajyoti Sahu; Kashyap Dave; Teemu Kivioja; Jussi Taipale (Bioinform., 2016)

The interaction landscape between transcription factors and the nucleosome. - Fangjie Zhu; Lucas Farnung; Eevi Kaasinen; Biswajyoti Sahu; Yimeng Yin; Bei Wei; Svetlana O. Dodonova; Kazuhiro R. Nitta; Ekaterina Morgunova; Minna Taipale; Patrick Cramer; Jussi Taipale (Nat., 2018)