DISMIR: Deep learning-based noninvasive cancer detection by integrating DNA sequence and methylation information of individual cell-free DNA reads. - Jiaqi Li; Lei Wei; Xianglin Zhang; Wei Zhang 241; Haochen Wang; Bixi Zhong; Zhen Xie; Hairong Lv; Xiaowo Wang (Briefings Bioinform., 2021)

cfDNApipe: a comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data. - Wei Zhang 241; Lei Wei; Jiaqi Huang; Bixi Zhong; Jiaqi Li; Hanwen Xu; Shuying He; Yu Liu; Juhong Liu; Hairong Lv; Xiaowo Wang (Bioinform., 2021)

Evaluating methylation of human ribosomal DNA at each CpG site reveals its utility for cancer detection using cell-free DNA. - Xianglin Zhang; Xiaodong Jia; Bixi Zhong; Lei Wei; Jiaqi Li; Wei Zhang 241; Huan Fang 003; Yanda Li; Yinying Lu; Xiaowo Wang (Briefings Bioinform., 2022)

ARIC: accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data. - Wei Zhang 241; Hanwen Xu; Rong Qiao; Bixi Zhong; Xianglin Zhang; Jin Gu; Xuegong Zhang; Lei Wei; Xiaowo Wang (Briefings Bioinform., 2022)