Hypothesis-driven approach to predict transcriptional units from gene expression data. - Dirk Steinhauser; Björn H. Junker; Alexander Lüdemann; Joachim Selbig; Joachim Kopka (Bioinform., 2004)

Application of Petri net theory for modelling and validation of the sucrose breakdown pathway in the potato tuber. - Ina Koch; Björn H. Junker; Monika Heiner (Bioinform., 2005)

VANTED: A system for advanced data analysis and visualization in the context of biological networks. - Björn H. Junker; Christian Klukas; Falk Schreiber (BMC Bioinform., 2006)

Exploration of biological network centralities with CentiBiN. - Björn H. Junker; Dirk Koschützki; Falk Schreiber (BMC Bioinform., 2006)

Meta-All: a system for managing metabolic pathway information. - Stephan Weise; Ivo Grosse; Christian Klukas; Dirk Koschützki; Uwe Scholz; Falk Schreiber; Björn H. Junker (BMC Bioinform., 2006)

Kinetic Modelling with the Systems Biology Modelling Environment SyBME. - Björn H. Junker; Dirk Koschützki; Falk Schreiber (J. Integr. Bioinform., 2006)

Modularization of biochemical networks based on classification of Petri net t-invariants. - Eva Grafahrend-Belau; Falk Schreiber; Monika Heiner; Andrea Sackmann; Björn H. Junker; Stefanie Grunwald; Astrid Speer; Katja Winder; Ina Koch (BMC Bioinform., 2008)

MetaCrop: a detailed database of crop plant metabolism. - Eva Grafahrend-Belau; Stephan Weise; Dirk Koschützki; Uwe Scholz; Björn H. Junker; Falk Schreiber (Nucleic Acids Res., 2008)

An Integration and Analysis Pipeline for Systems Biology in Crop Plant Metabolism. - Stephan Weise; Christian Colmsee; Eva Grafahrend-Belau; Björn H. Junker; Christian Klukas; Matthias Lange 001; Uwe Scholz; Falk Schreiber (DILS, 2009)

Datenaustausch und Datenintegration zur Modellierung und Analyse metabolischer Netzwerke am Beispiel von Kulturpflanzen. - Stephan Weise; Christian Colmsee; Eva Grafahrend-Belau; Björn H. Junker; Christian Klukas; Matthias Lange 001; Uwe Scholz; Falk Schreiber (GI Jahrestagung, 2009)

FBA-SimVis: interactive visualization of constraint-based metabolic models. - Eva Grafahrend-Belau; Christian Klukas; Björn H. Junker; Falk Schreiber (Bioinform., 2009)

Comparison of different algorithms for simultaneous estimation of multiple parameters in kinetic metabolic models. - Syed Murtuza Baker; Kai Schallau; Björn H. Junker (J. Integr. Bioinform., 2010)

Novel Developments of the MetaCrop Information System for Facilitating Systems Biological Approaches. - Klaus Hippe; Christian Colmsee; Tobias Czauderna; Eva Grafahrend-Belau; Björn H. Junker; Christian Klukas; Uwe Scholz; Falk Schreiber; Stephan Weise (J. Integr. Bioinform., 2010)

Unscented Kalman filter with parameter identifiability analysis for the estimation of multiple parameters in kinetic models. - Syed Murtuza Baker; C. Hart Poskar; Björn H. Junker (EURASIP J. Bioinform. Syst. Biol., 2011)

Das Informationssystem MetaCrop zur Unterstützung systembiologischer Forschung an Kulturpflanzen. - Stephan Weise; Jinbo Chen; Björn H. Junker; Matthias Klapperstück; Matthias Lange 001; Falk Schreiber; Uwe Scholz (it Inf. Technol., 2011)

iMS2Flux - a high-throughput processing tool for stable isotope labeled mass spectrometric data used for metabolic flux analysis. - C. Hart Poskar; Jan Huege; Christian Krach; Mathias Franke; Yair Shachar-Hill; Björn H. Junker (BMC Bioinform., 2012)

FluxMap: A VANTED add-on for the visual exploration of flux distributions in biological networks. - Hendrik Rohn; Anja Hartmann; Astrid Junker; Björn H. Junker; Falk Schreiber (BMC Syst. Biol., 2012)

MetaCrop 2.0: managing and exploring information about crop plant metabolism. - Falk Schreiber; Christian Colmsee; Tobias Czauderna; Eva Grafahrend-Belau; Anja Hartmann; Astrid Junker; Björn H. Junker; Matthias Klapperstück; Uwe Scholz; Stephan Weise (Nucleic Acids Res., 2012)

An improved constraint filtering technique for inferring hidden states and parameters of a biological model. - Syed Murtuza Baker; C. Hart Poskar; Falk Schreiber; Björn H. Junker (Bioinform., 2013)

A unified framework for estimating parameters of kinetic biological models. - Syed Murtuza Baker; C. Hart Poskar; Falk Schreiber; Björn H. Junker (BMC Bioinform., 2015)

Biochemical Fundamentals. - Tiina Liiving; Syed Murtuza Baker; Björn H. Junker (Modeling in Systems Biology, The Petri Net Approach, 2016)

Topological Analysis of Metabolic and Regulatory Networks. - Stefan Schuster; Björn H. Junker (Modeling in Systems Biology, The Petri Net Approach, 2016)