Computational Resources in Infectious Disease: Limitations and Challenges. - Eva C. Berglund; Björn Nystedt; Siv G. E. Andersson (PLoS Comput. Biol., 2009)

BESST - Efficient scaffolding of large fragmented assemblies. - Kristoffer Sahlin; Francesco Vezzi; Björn Nystedt; Joakim Lundeberg; Lars Arvestad (BMC Bioinform., 2014)

Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants. - Maxime Garcia; Szilveszter Juhos; Malin Larsson; Páll Ísólfur Ólason; Marcel Martin; Jesper Eisfeldt; Sebastian DiLorenzo; Johanna Sandgren; Teresita Diaz de Ståhl; Philip Ewels; Valtteri Wirta; Monica Nistér; et al. (F1000Research, 2020)

GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species. - Verena E. Kutschera; Marcin Kierczak; Tom van der Valk; Johanna von Seth; Nicolas Dussex; Edana Lord; Marianne Dehasque; David W. G. Stanton; Payam Emami Khoonsari; Björn Nystedt; Love Dalén; David Díez-del-Molino (BMC Bioinform., 2022)