CELLmicrocosmos 4.1 - An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment. - Björn Sommer 001; Jörn Künsemöller; Norbert Sand; Arne Husemann; Madis Rumming; Benjamin Kormeier (BIOINFORMATICS, 2010)

CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes. - Björn Sommer 001; Tim Dingersen; Sebastian E. Schneider; Sebastian Rubert; Christian Gamroth (J. Cheminformatics, 2010)

Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. - Björn Sommer 001; Evgeny S. Tiys; Benjamin Kormeier; Klaus Hippe; Sebastian Janowski; Timofey V. Ivanisenko; Anatoly O. Bragin; Patrizio Arrigo; Pavel Demenkov; Alexey V. Kochetov; Vladimir A. Ivanisenko; Nikolay A. Kolchanov; et al. (J. Integr. Bioinform., 2010)

Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes. - Björn Sommer 001; Tim Dingersen; Christian Gamroth; André J. Heissmann; Gunther Lukat; Ralf Rotzoll; Sebastian Rubert; Alexander Schäfer; Jens Krüger 002 (J. Cheminformatics, 2011)

CELLmicrocosmos 2.2 MembraneEditor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems. - Björn Sommer 001; Tim Dingersen; Christian Gamroth; Sebastian E. Schneider; Sebastian Rubert; Jens Krüger 002; Karl-Josef Dietz (J. Chem. Inf. Model., 2011)

The GMX-Plugin for the CELLmicrocosmos MembraneEditor. - Sebastian Rubert; Christian Gamroth; André J. Heissmann; Gunther Lukat; Ralf Rotzoll; Alexander Schäfer; Jens Krüger 002; Björn Sommer 001 (J. Cheminformatics, 2012)

Subcellular Localization Charts: a New Visual Methodology for the Semi-Automatic Localization of protein-Related Data Sets. - Björn Sommer 001; Benjamin Kormeier; Pavel Demenkov; Patrizio Arrigo; Klaus Hippe; Özgür Ates; Alexey V. Kochetov; Vladimir A. Ivanisenko; Nikolay A. Kolchanov; Ralf Hofestädt (J. Bioinform. Comput. Biol., 2013)

APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories. - Gunther Lukat; Jens Krüger 002; Björn Sommer 001 (J. Chem. Inf. Model., 2013)

Editorial. - Ralf Hofestädt; Benjamin Kormeier; Matthias Lange 001; Falk Schreiber; Björn Sommer 001; Stephan Weise (J. Integr. Bioinform., 2013)

CELLmicrocosmos - Integrative cell modeling at the molecular, mesoscopic and functional level. - Björn Sommer 001 (2013)

Network Analysis and Integration in a Virtual Cell Environment. - Björn Sommer 001 (Approaches in Integrative Bioinformatics, 2014)

Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization. - Thomas Waltemate; Björn Sommer 001; Mario Botsch (VCBM, 2014)

Membrane simulation analysis using Voronoi tessellation. - Gunther Lukat; Björn Sommer 001; Jens Krüger 002 (J. Cheminformatics, 2014)

Stereoscopic cell visualization: from mesoscopic to molecular scale. - Björn Sommer 001; Christian Bender; Tobias Hoppe; Christian Gamroth; Lukas Jelonek (J. Electronic Imaging, 2014)

Hybrid-Dimensional Visualization and Interaction - Integrating 2D and 3D Visualization with Semi-Immersive Navigation Techniques. - Björn Sommer 001; Stephen Jia Wang; Lifeng Xu; Ming Chen 005; Falk Schreiber (BDVA, 2015)

Specifications of Standards in Systems and Synthetic Biology. - Falk Schreiber; Gary D. Bader; Martin Golebiewski; Michael Hucka; Benjamin Kormeier; Nicolas Le Novère; Chris J. Myers; David P. Nickerson; Björn Sommer 001; Dagmar Waltemath; Stephan Weise (J. Integr. Bioinform., 2015)

Communicating the Effect of Human Behaviour on the Great Barrier Reef via Mixed Reality Visualisation. - Hieu T. Nim; Mengyang Wang; Yujie Zhu; Björn Sommer 001; Falk Schreiber; Sarah E. Boyd; Stephen Jia Wang (BDVA, 2016)

Stereoscopic Space Map - Semi-immersive Configuration of 3D-stereoscopic Tours in Multi-display Environments. - Björn Sommer 001; Andreas Hamacher; Owen Kaluza; Tobias Czauderna; Matthias Klapperstück; Niklas Biere; Marco Civico; Bruce H. Thomas; David G. Barnes; Falk Schreiber (SD&A, 2016)

Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios. - Gökhan Kovanci; Mehmood Ghaffar; Björn Sommer 001 (J. Integr. Bioinform., 2016)

DaTo: an atlas of biological databases and tools. - Qilin Li; Yincong Zhou; Yingmin Jiao; Zhao Zhang 012; Lin Bai; Li Tong; Xiong Yang; Björn Sommer 001; Ralf Hofestädt; Ming Chen 005 (J. Integr. Bioinform., 2016)

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016. - Falk Schreiber; Gary D. Bader; Padraig Gleeson; Martin Golebiewski; Michael Hucka; Nicolas Le Novère; Chris J. Myers; David P. Nickerson; Björn Sommer 001; Dagmar Waltemath (J. Integr. Bioinform., 2016)

3D-Stereoscopic Immersive Analytics Projects at Monash University and University of Konstanz. - Björn Sommer 001; David G. Barnes; Sarah E. Boyd; Tom Chandler; Maxime Cordeil; Tobias Czauderna; Matthias Klapperstück; Karsten Klein 001; Toàn D. Nguyên; Hieu T. Nim; Kingsley Stephens; Dany Vohl; et al. (SD&A, 2017)

Design Considerations for Immersive Analytics of Bird Movements Obtained by Miniaturised GPS Sensors. - Hieu T. Nim; Björn Sommer 001; Karsten Klein 001; Andrea Flack; Kamran Safi; Máté Nagy 001; Wolfgang Fiedler; Martin Wikelski; Falk Schreiber (VCBM, 2017)

Integration and virtual reality exploration of biomedical data with CmPI and VANTED. - Björn Sommer 001; Falk Schreiber (it Inf. Technol., 2017)

Computational miRNomics - Integrative Approaches. - Ralf Hofestädt; Falk Schreiber; Björn Sommer 001; Jens Allmer (J. Integr. Bioinform., 2017)

Stereoscopic Displays and Applications XXIX - Introduction. - Andrew J. Woods; Nicolas S. Holliman; Gregg E. Favalora; Takashi Kawai; Björn Sommer 001 (SD&A, 2018)

Virtual Reality for Sensor Data Visualization and Analysis. - Artur Baltabayev; Alexej Gluschkow; Johannes Blank; Gero Birkhölzer; Jean Büsche; Martin Kern; Fabian Klopfer; Lisa-Maria Mayer; Gabriel Scheibler; Karsten Klein 001; Falk Schreiber; Björn Sommer 001 (ERVR, 2018)

Comparing Sequential and Temporal Patterns from Human Mobility Data for Next-Place Prediction. - Yunlong Wang 005; Corinna Breitinger; Björn Sommer 001; Falk Schreiber; Harald Reiterer (UMAP (Adjunct Publication), 2018)

3D Modelling and Visualisation of Heterogeneous Cell Membranes in Blender. - Mehmood Ghaffar; Niklas Biere; Daniel Jäger; Karsten Klein 001; Falk Schreiber; Olaf Kruse; Björn Sommer 001 (VINCI, 2018)

Clustering with Temporal Constraints on Spatio-Temporal Data of Human Mobility. - Yunlong Wang 005; Björn Sommer 001; Falk Schreiber; Harald Reiterer (CoRR, 2018)

Heuristic Modeling and 3D Stereoscopic Visualization of a Chlamydomonas reinhardtii Cell. - Niklas Biere; Mehmood Ghaffar; Anja Doebbe; Daniel Jäger; Nils Rothe; Benjamin M. Friedrich; Ralf Hofestädt; Falk Schreiber; Olaf Kruse; Björn Sommer 001 (J. Integr. Bioinform., 2018)

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017. - Falk Schreiber; Gary D. Bader; Padraig Gleeson; Martin Golebiewski; Michael Hucka; Sarah M. Keating; Nicolas Le Novère; Chris J. Myers; David P. Nickerson; Björn Sommer 001; Dagmar Waltemath (J. Integr. Bioinform., 2018)

From Virtual Reality to Immersive Analytics in Bioinformatics. - Björn Sommer 001; Marc Baaden; Michael Krone; Andrew J. Woods (J. Integr. Bioinform., 2018)

Immersive Analytics Applications in Life and Health Sciences. - Tobias Czauderna; Jason Haga; Jinman Kim; Matthias Klapperstück; Karsten Klein 001; Torsten W. Kuhlen; Steffen Oeltze-Jafra; Björn Sommer 001; Falk Schreiber (Immersive Analytics, 2018)

Tiled Stereoscopic 3D Display Wall - Concept, Applications and Evaluation. - Björn Sommer 001; Alexandra Diehl; Michael Aichem; Philipp Meschenmoser; Kim Rehberg; David Weber; Ying Zhang; Karsten Klein 001; Daniel A. Keim; Falk Schreiber (SD&A, 2019)

30th Annual Stereoscopic Displays and Applications Conference - Introduction. - Andrew J. Woods; Nicolas S. Holliman; Gregg E. Favalora; Takashi Kawai; Björn Sommer 001 (SD&A, 2019)

BinocularsVR - A VR experience for the exhibition "From Lake Constance to Africa, a long distance travel with ICARUS". - Bjorn Sommer 001; Stefan P. Feyer; Daniel Klinkhammer; Karsten Klein 001; Jonathan Wieland; Daniel Fink 001; Wolfgang Fiedler; Andrea Flack; Máté Nagy 001; Martin Wikelski; Harald Reiterer; Falk Schreiber (ERVR, 2019)

TEAMwISE: Synchronised Immersive Environments for Exploration and Analysis of Movement Data. - Karsten Klein 001; Michael Aichem; Björn Sommer 001; Stefan Erk; Ying Zhang; Falk Schreiber (VINCI, 2019)

JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools. - Marcel Friedrichs; Alban Shoshi; Piotr Chmura; Jon C. Ison; Veit Schwämmle; Falk Schreiber; Ralf Hofestädt; Björn Sommer 001 (J. Integr. Bioinform., 2019)

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019. - Falk Schreiber; Björn Sommer 001; Gary D. Bader; Padraig Gleeson; Martin Golebiewski; Michael Hucka; Sarah M. Keating; Matthias König 003; Chris J. Myers; David P. Nickerson; Dagmar Waltemath (J. Integr. Bioinform., 2019)

The CELLmicrocosmos Tools: A Small History of Java-Based Cell and Membrane Modelling Open Source Software Development. - Björn Sommer 001 (J. Integr. Bioinform., 2019)

IoT Product Pleasurability - Investigating the Pleasurable User Experiences Between Conventional Products and IoT Products Through Watches. - Zidong Lin; Bjorn Sommer 001; Saeema Ahmed-Kristensen (ArtsIT, 2020)

Bio-related Design Genres: A Survey on Familiarity and Potential Applications. - Nurul 'Ayn Ahmad Sayuti; Bjorn Sommer 001; Saeema Ahmed-Kristensen (ArtsIT, 2020)

Immersive Design Engineering. - Björn Sommer 001; Chang Hee Lee; Nat Martin; Vanna Savina Torrisi (SD&A, 2020)

31st Annual Stereoscopic Displays and Applications Conference - Introduction. - Andrew J. Woods; Nicolas S. Holliman; Gregg E. Favalora; Takashi Kawai; Björn Sommer 001 (SD&A, 2020)

The Vesicle Builder - A Membrane Packing Algorithm for the CELLmicrocosmos MembraneEditor. - Beatrice Giuliari; Manuel Kösters; Jan Zhou; Tim Dingersen; André J. Heissmann; Ralf Rotzoll; Jens Krüger 002; Alejandro Giorgetti; Björn Sommer 001 (MolVa@Eurographics/EuroVis, 2020)

Specifications of standards in systems and synthetic biology: status and developments in 2020. - Falk Schreiber; Björn Sommer 001; Tobias Czauderna; Martin Golebiewski; Thomas E. Gorochowski; Michael Hucka; Sarah M. Keating; Matthias König 003; Chris J. Myers; David P. Nickerson; Dagmar Waltemath (J. Integr. Bioinform., 2020)

Hybrid Stereoscopic Photography - Analogue Stereo Photography meets the Digital Age with the StereoCompass app. - Björn Sommer 001 (SD&A, 2021)

32nd Annual Stereoscopic Displays and Applications Conference - Introduction. - Andrew J. Woods; Nicolas S. Holliman; Gregg E. Favalora; Takashi Kawai; Björn Sommer 001 (SD&A, 2021)

Foreword to the special section on molecular graphics and visual analysis of molecular data (MolVA 2021). - Jan Byska; Michael Krone; Bjorn Sommer 001 (Comput. Graph., 2021)

Specifications of standards in systems and synthetic biology: status and developments in 2021. - Falk Schreiber; Padraig Gleeson; Martin Golebiewski; Thomas E. Gorochowski; Michael Hucka; Sarah M. Keating; Matthias König 003; Chris J. Myers; David P. Nickerson; Björn Sommer 001; Dagmar Waltemath (J. Integr. Bioinform., 2021)

TEAMwISE: synchronised immersive environments for exploration and analysis of animal behaviour. - Karsten Klein 001; Michael Aichem; Ying Zhang; Stefan Erk; Björn Sommer 001; Falk Schreiber (J. Vis., 2021)

Foreword. - Kay Nieselt; Steffen Oeltze-Jafra; Thomas Schultz 001; Noeska N. Smit; Björn Sommer 001 (Comput. Graph., 2022)

Immersive Analytics with Abstract 3D Visualizations: A Survey. - Matthias Kraus 002; Johannes Fuchs 001; Björn Sommer 001; Karsten Klein 001; Ulrich Engelke; Daniel A. Keim; Falk Schreiber (Comput. Graph. Forum, 2022)

Design X Bioinformatics: a community-driven initiative to connect bioinformatics and design. - Björn Sommer 001; Daisuke Inoue; Marc Baaden (J. Integr. Bioinform., 2022)

APL@voro - interactive visualization and analysis of cell membrane simulations. - Martin Kern; Sabrina Jaeger-Honz; Falk Schreiber; Björn Sommer 001 (Bioinform., 2023)

Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022. - Matthias König 003; Padraig Gleeson; Martin Golebiewski; Thomas E. Gorochowski; Michael Hucka; Sarah M. Keating; Chris J. Myers; David P. Nickerson; Björn Sommer 001; Dagmar Waltemath; Falk Schreiber (J. Integr. Bioinform., 2023)

Foreword: Special section on Molecular Graphics and Visual Analysis of Molecular Data (MolVA 2023). - Jan Byska; Michael Krone; Björn Sommer 001 (Comput. Graph., 2023)

Foreword special section on VSI: C&G VCBM 2022. - Renata G. Raidou; Bjorn Sommer 001; Torsten W. Kuhlen; Michael Krone; Thomas Schultz 001; Hsiang-Yun Wu (Comput. Graph., 2024)

Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024. - Martin Golebiewski; Gary D. Bader; Padraig Gleeson; Thomas E. Gorochowski; Sarah M. Keating; Matthias König 003; Chris J. Myers; David P. Nickerson; Björn Sommer 001; Dagmar Waltemath; Falk Schreiber (J. Integr. Bioinform., 2024)

International symposium on integrative bioinformatics 2024 - editorial. - Can Türker; Christian Panse; Björn Sommer 001; Marcel Friedrichs; Ralf Hofestädt (J. Integr. Bioinform., 2024)

Research Data: "APL@voro - interactive visualization and analysis of cell membrane simulations". - Martin Kern; Sabrina Jaeger-Honz; Falk Schreiber; Björn Sommer 001 (DaRUS, 2024)

Sustainable software development in science - insights from 20 years of Vanted. - Falk Schreiber; Tobias Czauderna; Dimitar Garkov; Niklas Gröne; Karsten Klein 001; Matthias Lange 001; Uwe Scholz; Björn Sommer 001 (J. Integr. Bioinform., 2025)