Pcons5: combining consensus, structural evaluation and fold recognition scores. - Björn Wallner; Arne Elofsson (Bioinform., 2005)

Pcons.net: protein structure prediction meta server. - Björn Wallner; Per Larsson; Arne Elofsson (Nucleic Acids Res., 2007)

Model quality assessment for membrane proteins. - Arjun Ray; Erik Lindahl; Björn Wallner (Bioinform., 2010)

Modeling Anesthetic Binding Sites within the Glycine Alpha One Receptor Based on Prokaryotic Ion Channel Templates: The Problem with TM4. - Edward J. Bertaccini; Björn Wallner; James R. Trudell; Erik Lindahl (J. Chem. Inf. Model., 2010)

Improved predictions by Pcons.net using multiple templates. - Per Larsson; Marcin J. Skwark; Björn Wallner; Arne Elofsson (Bioinform., 2011)

Improved model quality assessment using ProQ2. - Arjun Ray; Erik Lindahl; Björn Wallner (BMC Bioinform., 2012)

ProQM-resample: improved model quality assessment for membrane proteins by limited conformational sampling. - Björn Wallner (Bioinform., 2014)

Finding correct protein-protein docking models using ProQDock. - Sankar Basu; Björn Wallner (Bioinform., 2016)

ProQ2: estimation of model accuracy implemented in Rosetta. - Karolis Uziela; Björn Wallner (Bioinform., 2016)

ProQ3D: improved model quality assessments using deep learning. - Karolis Uziela; David Menéndez Hurtado; Nanjiang Shu; Björn Wallner; Arne Elofsson (Bioinform., 2017)

Proteus: a random forest classifier to predict disorder-to-order transitioning binding regions in intrinsically disordered proteins. - Sankar Basu; Fredrik Söderquist; Björn Wallner (J. Comput. Aided Mol. Des., 2017)

Topology independent structural matching discovers novel templates for protein interfaces. - Claudio Mirabello; Björn Wallner (Bioinform., 2018)

InterPep2: global peptide-protein docking using interaction surface templates. - Isak Johansson-Åkhe; Claudio Mirabello; Björn Wallner (Bioinform., 2020)

InterLig: improved ligand-based virtual screening using topologically independent structural alignments. - Claudio Mirabello; Björn Wallner (Bioinform., 2020)

InterPepRank: Assessment of Docked Peptide Conformations by a Deep Graph Network. - Isak Johansson-Åkhe; Claudio Mirabello; Björn Wallner (Frontiers Bioinform., 2021)

InterPepScore: a deep learning score for improving the FlexPepDock refinement protocol. - Isak Johansson-Åkhe; Björn Wallner (Bioinform., 2022)

Improving peptide-protein docking with AlphaFold-Multimer using forced sampling. - Isak Johansson-Åkhe; Björn Wallner (Frontiers Bioinform., 2022)

CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins. - Alessio Del Conte; Adel Bouhraoua; Mahta Mehdiabadi; Damiano Clementel; Alexander Miguel Monzon; Alex S. Holehouse; Daniel A. Griffith; Ryan J. Emenecker; Ashwini Patil; Ronesh Sharma; Tatsuhiko Tsunoda; Alok Sharma; et al. (Nucleic Acids Res., 2023)

AFsample: improving multimer prediction with AlphaFold using massive sampling. - Björn Wallner (Bioinform., 2023)

MassiveFold: unveiling AlphaFold's hidden potential with optimized and parallelized massive sampling. - Nessim Raouraoua; Claudio Mirabello; Thibaut Véry; Christophe Blanchet; Björn Wallner; Marc F. Lensink; Guillaume Brysbaert (Nat. Comput. Sci., 2024)