Chemical profiling of the plant cell wall through Raman microspectroscopy. - Ju Han; Seema Singh; Lan Sun; Blake A. Simmons; Manfred Auer; Bahram Parvin (ISBI, 2010)

MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets. - Yu-Wei Wu; Blake A. Simmons; Steven W. Singer (Bioinform., 2016)

Rhorix: An interface between quantum chemical topology and the 3D graphics program blender. - Matthew J. L. Mills; Kenneth L. Sale; Blake A. Simmons; Paul L. A. Popelier (J. Comput. Chem., 2017)