Unique peptide prediction of RNase family sequences based on reinforced merging algorithms. - Hao-Teng Chang; Tan-Chi Fan; Margaret Dah-Tsyr Chang; Tun-Wen Pai; Bo-Han Su; Pei-Chih Wu (APBC, 2005)

A reinforced merging methodology for mapping unique peptide motifs in members of protein families. - Hao-Teng Chang; Tun-Wen Pai; Tan-Chi Fan; Bo-Han Su; Pei-Chih Wu; Chuan Yi Tang; Chun-Tien Chang; Shi-Hwei Liu; Margaret Dah-Tsyr Chang (BMC Bioinform., 2006)

Unique Peptide Identification of Rnasea Superfamily Sequences Based on Reinforced Merging Algorithms. - Tun-Wen Pai; Bo-Han Su; Pei-Chih Wu; Margaret Dah-Tsyr Chang; Hao-Teng Chang; Tan-Chi Fan; Shi-Hwei Liu (J. Bioinform. Comput. Biol., 2006)

REMUS: a tool for identification of unique peptide segments as epitopes. - Tun-Wen Pai; Margaret Dah-Tsyr Chang; Wen-Shyong Tzou; Bo-Han Su; Pei-Chih Wu; Hao-Teng Chang; Wei-I Chou (Nucleic Acids Res., 2006)

In Silico Binary Classification QSAR Models Based on 4D-Fingerprints and MOE Descriptors for Prediction of hERG Blockage. - Bo-Han Su; Meng-yu Shen; Emilio Xavier Esposito; Anton J. Hopfinger; Yufeng J. Tseng (J. Chem. Inf. Model., 2010)

Predictive Toxicology Modeling: Protocols for Exploring hERG Classification and Tetrahymena pyriformis End Point Predictions. - Bo-Han Su; Yi-shu Tu; Emilio Xavier Esposito; Yufeng J. Tseng (J. Chem. Inf. Model., 2012)

Dependence of QSAR Models on the Selection of Trial Descriptor Sets: A Demonstration Using Nanotoxicity Endpoints of Decorated Nanotubes. - Chi-Yu Shao; Sing-Zuo Chen; Bo-Han Su; Yufeng J. Tseng; Emilio Xavier Esposito; Anton J. Hopfinger (J. Chem. Inf. Model., 2013)

CypRules: a rule-based P450 inhibition prediction server. - Chi-Yu Shao; Bo-Han Su; Yi-shu Tu; Chieh Lin; Olivia A. Lin; Yufeng J. Tseng (Bioinform., 2015)

Rule-Based Classification Models of Molecular Autofluorescence. - Bo-Han Su; Yi-shu Tu; Olivia A. Lin; Yeu-Chern Harn; Meng-yu Shen; Yufeng J. Tseng (J. Chem. Inf. Model., 2015)

Rule-Based Prediction Models of Cytochrome P450 Inhibition. - Bo-Han Su; Yi-shu Tu; Chieh Lin; Chi-Yu Shao; Olivia A. Lin; Yufeng J. Tseng (J. Chem. Inf. Model., 2015)

G.A.M.E.: GPU-accelerated mixture elucidator. - Alioune Schurz; Bo-Han Su; Yi-shu Tu; Tony Tsung-Yu Lu; Olivia A. Lin; Yufeng J. Tseng (J. Cheminformatics, 2017)

An efficient computer-aided structural elucidation strategy for mixtures using an iterative dynamic programming algorithm. - Bo-Han Su; Meng-yu Shen; Yeu-Chern Harn; San-Yuan Wang; Alioune Schurz; Chieh Lin; Olivia A. Lin; Yufeng J. Tseng (J. Cheminformatics, 2017)

NP-StructurePredictor: Prediction of Unknown Natural Products in Plant Mixtures. - Yeu-Chern Harn; Bo-Han Su; Yuan-Ling Ku; Olivia A. Lin; Cheng-Fu Chou; Yufeng J. Tseng (J. Chem. Inf. Model., 2017)

Human Breathomics Database. - Tien-Chueh Kuo; Cheng-En Tan; San-Yuan Wang; Olivia A. Lin; Bo-Han Su; Ming-Tsung Hsu; Jessica Lin; Yu-Yen Cheng; Ciao-Sin Chen; Yu-Chieh Yang; Kuo-Hsing Chen; Shu-Wen Lin; et al. (Database J. Biol. Databases Curation, 2020)

Current development of integrated web servers for preclinical safety and pharmacokinetics assessments in drug development. - Yi Hsiao; Bo-Han Su; Yufeng J. Tseng (Briefings Bioinform., 2021)

PanGPCR: predictions for multiple targets, repurposing and side effects. - Lu-Chi Liu; Ming-Yang Ho; Bo-Han Su; San-Yuan Wang; Ming-Tsung Hsu; Yufeng J. Tseng (Bioinform., 2021)

Comparative studies of AlphaFold, RoseTTAFold and Modeller: a case study involving the use of G-protein-coupled receptors. - Chien Lee; Bo-Han Su; Yufeng Jane Tseng (Briefings Bioinform., 2022)

Ensemble modeling with machine learning and deep learning to provide interpretable generalized rules for classifying CNS drugs with high prediction power. - Tzu-Hui Yu; Bo-Han Su; Leo Chander Battalora; Sin Liu; Yufeng Jane Tseng (Briefings Bioinform., 2022)

A robust and interpretable graph neural network-based protocol for predicting p-glycoprotein substrates. - Kuang-Cheng Hsu; Pei-Hua Wang; Bo-Han Su; Yufeng Jane Tseng (Briefings Bioinform., 2025)