simuPOP: a forward-time population genetics simulation environment. - Bo Peng 001; Marek Kimmel (Bioinform., 2005)

Forward-time simulations of non-random mating populations using simuPOP. - Bo Peng 001; Christopher I. Amos (Bioinform., 2008)

Forward-time simulation of realistic samples for genome-wide association studies. - Bo Peng 001; Christopher I. Amos (BMC Bioinform., 2010)

Genome-wide algorithm for detecting CNV associations with diseases. - Yaji Xu; Bo Peng 001; Yunxin Fu; Christopher I. Amos (BMC Bioinform., 2011)

Derived SNP Alleles are Used More Frequently than Ancestral Alleles as Risk-associated Variants in Common Human Diseases. - Olga Y. Gorlova; Jun Ying; Christopher I. Amos; Margaret R. Spitz; Bo Peng 001; Ivan P. Gorlov (J. Bioinform. Comput. Biol., 2012)

SoS Notebook: an interactive multi-language data analysis environment. - Bo Peng 001; Gao Wang; Jun Ma; Man Chong Leong; Chris Wakefield; James M. Melott; Yulun Chiu; Di Du; John N. Weinstein (Bioinform., 2018)

Response envelope analysis for quantitative evaluation of drug combinations. - Di Du; Chia-Hua Chang; Yumeng Wang; Pan Tong; Wai Kin Chan; Yulun Chiu; Bo Peng 001; Lin Tan 002; John N. Weinstein; Philip L. Lorenzi (Bioinform., 2019)

ElemCor: accurate data analysis and enrichment calculation for high-resolution LC-MS stable isotope labeling experiments. - Di Du; Lin Tan 002; Yumeng Wang; Bo Peng 001; John N. Weinstein; Fredric E. Wondisford; Xiaoyang Su; Philip L. Lorenzi (BMC Bioinform., 2019)

Script of Scripts: A pragmatic workflow system for daily computational research. - Gao Wang; Bo Peng 001 (PLoS Comput. Biol., 2019)