A Novel Computational Method for Predicting LncRNA-Disease Associations from Heterogeneous Information Network with SDNE Embedding Model. - Ping Zhang 027; Bo-Wei Zhao; Leon Wong; Zhu-Hong You; Zhen-Hao Guo; Hai-Cheng Yi (ICIC (2), 2020)

Predicting LncRNA-miRNA Interactions via Network Embedding with Integrated Structure and Attribute Information. - Bo-Wei Zhao; Ping Zhang 027; Zhu-Hong You; Ji-Ren Zhou; Xiao Li 007 (ICIC (2), 2020)

Predicting miRNA-Disease Associations via a New MeSH Headings Representation of Diseases and eXtreme Gradient Boosting. - Bo-Ya Ji; Zhu-Hong You; Lei Wang 121; Leon Wong; Xiao-Rui Su 001; Bo-Wei Zhao (ICIC (3), 2021)

Detection of Drug-Drug Interactions Through Knowledge Graph Integrating Multi-attention with Capsule Network. - Xiao-Rui Su 001; Zhu-Hong You; Hai-Cheng Yi; Bo-Wei Zhao (ICIC (3), 2021)

A Multi-graph Deep Learning Model for Predicting Drug-Disease Associations. - Bo-Wei Zhao; Zhu-Hong You; Lun Hu; Leon Wong; Bo-Ya Ji; Ping Zhang 027 (ICIC (3), 2021)

Predicting Large-scale Protein-protein Interactions by Extracting Coevolutionary Patterns with MapReduce Paradigm. - Lun Hu; Bo-Wei Zhao; Shicheng Yang; Xin Luo 001; MengChu Zhou (SMC, 2021)

SANE: A sequence combined attentive network embedding model for COVID-19 drug repositioning. - Xiao-Rui Su 001; Zhuhong You; Lei Wang 121; Lun Hu; Leon Wong; Boya Ji; Bo-Wei Zhao (Appl. Soft Comput., 2021)

Cost and Care Insight: An Interactive and Scalable Hierarchical Learning System for Identifying Cost Saving Opportunities. - Yuan Zhang; David Koepke; Bibo Hao; Jing Mei; Xu Min; Rachna Gupta; Rajashree Joshi; Fiona McNaughton; Zhan-Heng Chen; Bo-Wei Zhao; Lun Hu; Pengwei Hu 001 (ICIC (1), 2022)

Predicting Drug-Disease Associations via Meta-path Representation Learning based on Heterogeneous Information Net works. - Menglong Zhang; Bo-Wei Zhao; Lun Hu; Zhu-Hong You; Zhan-Heng Chen (ICIC (2), 2022)

MRLDTI: A Meta-path-Based Representation Learning Model for Drug-Target Interaction Prediction. - Bo-Wei Zhao; Lun Hu; Pengwei Hu 001; Zhu-Hong You; Xiao-Rui Su 001; Dong-Xu Li; Zhan-Heng Chen; Ping Zhang 027 (ICIC (2), 2022)

A Novel Fuzzy-Based MOPSO Algorithm for Identifying Clusters From Complex Networks. - Yue Yang; Xiaorui Su 001; Bowei Zhao; Yizhou He; Lun Hu (ICTAI, 2022)

A novel circRNA-miRNA association prediction model based on structural deep neural network embedding. - Lu-Xiang Guo; Zhu-Hong You; Lei Wang 121; Changqing Yu; Bo-Wei Zhao; Zhong-Hao Ren; Jie Pan 007 (Briefings Bioinform., 2022)

A deep learning method for repurposing antiviral drugs against new viruses via multi-view nonnegative matrix factorization and its application to SARS-CoV-2. - Xiao-Rui Su 001; Lun Hu; Zhuhong You; Pengwei Hu 001; Lei Wang 121; Bo-Wei Zhao (Briefings Bioinform., 2022)

Attention-based Knowledge Graph Representation Learning for Predicting Drug-drug Interactions. - Xiao-Rui Su 001; Lun Hu; Zhuhong You; Pengwei Hu 001; Bo-Wei Zhao (Briefings Bioinform., 2022)

A machine learning framework based on multi-source feature fusion for circRNA-disease association prediction. - Lei Wang 121; Leon Wong; Zheng-Wei Li 001; Yuan Huang; Xiao-Rui Su 001; Bo-Wei Zhao; Zhuhong You (Briefings Bioinform., 2022)

iGRLCDA: identifying circRNA-disease association based on graph representation learning. - Han-Yuan Zhang; Lei Wang 121; Zhu-Hong You; Lun Hu; Bo-Wei Zhao; Zheng-Wei Li 001; Yang-Ming Li (Briefings Bioinform., 2022)

HINGRL: predicting drug-disease associations with graph representation learning on heterogeneous information networks. - Bo-Wei Zhao; Lun Hu; Zhu-Hong You; Lei Wang 121; Xiao-Rui Su 001 (Briefings Bioinform., 2022)

A geometric deep learning framework for drug repositioning over heterogeneous information networks. - Bo-Wei Zhao; Xiao-Rui Su 001; Peng-Wei Hu 001; Yu-Peng Ma; Xi Zhou; Lun Hu (Briefings Bioinform., 2022)

Multi-view heterogeneous molecular network representation learning for protein-protein interaction prediction. - Xiao-Rui Su 001; Lun Hu; Zhu-Hong You; Pengwei Hu 001; Bo-Wei Zhao (BMC Bioinform., 2022)

RLFDDA: a meta-path based graph representation learning model for drug-disease association prediction. - Menglong Zhang; Bo-Wei Zhao; Xiao-Rui Su 001; Yi-Zhou He; Yue Yang; Lun Hu (BMC Bioinform., 2022)

NSECDA: Natural Semantic Enhancement for CircRNA-Disease Association Prediction. - Lei Wang 121; Leon Wong; Zhu-Hong You; De-Shuang Huang; Xiao-Rui Su 001; Bo-Wei Zhao (IEEE J. Biomed. Health Informatics, 2022)

Learning RNA sequence patterns to interpretably identify m6A modification sites. - Guodong Li; Bowei Zhao; Xiaorui Su 001; Yue Yang; Pengwei Hu 001; Lun Hu (BIBM, 2023)

Drug Repositioning Method Based on Pre-trained Large Model and Network Embedding Representation. - Dongxu Li; Bowei Zhao; Xiaorui Su 001; Guodong Li; Yue Yang; Pengwei Hu 001; Lun Hu (ICDM (Workshops), 2023)

A Novel Graph Representation Learning Model for Drug Repositioning Using Graph Transition Probability Matrix Over Heterogenous Information Networks. - Dong-Xu Li; Xun Deng; Bo-Wei Zhao; Xiao-Rui Su 001; Guo-Dong Li; Zhu-Hong You; Peng-Wei Hu 001; Lun Hu (ICIC (3), 2023)

A Deep Learning Approach Incorporating Data Missing Mechanism in Predicting Acute Kidney Injury in ICU. - Yuan Zhang; Zhengbo Zhang; Xiaoli Liu; Lei Zha; Fengcong; Xiaorui Su 001; Bowei Zhao; Lun Hu; Pengwei Hu 001 (ICIC (3), 2023)

Multi-level Subgraph Representation Learning for Drug-Disease Association Prediction Over Heterogeneous Biological Information Network. - Bo-Wei Zhao; Xiao-Rui Su 001; Yue Yang; Dong-Xu Li; Peng-Wei Hu 001; Zhu-Hong You; Lun Hu (ICIC (3), 2023)

Incorporating higher order network structures to improve miRNA-disease association prediction based on functional modularity. - Yi-Zhou He; Yue Yang; Xiao-Rui Su 001; Bo-Wei Zhao; Shengwu Xiong 001; Lun Hu (Briefings Bioinform., 2023)

Biomedical Knowledge Graph Embedding With Capsule Network for Multi-Label Drug-Drug Interaction Prediction. - Xiaorui Su 001; Zhuhong You; Deshuang Huang; Lei Wang 121; Leon Wong; Boya Ji; Bowei Zhao (IEEE Trans. Knowl. Data Eng., 2023)

iGRLDTI: an improved graph representation learning method for predicting drug-target interactions over heterogeneous biological information network. - Bo-Wei Zhao; Xiao-Rui Su 001; Peng-Wei Hu 001; Yu-An Huang; Zhu-Hong You; Lun Hu (Bioinform., 2023)

motifMDA. - Bo-Wei Zhao (IEEE DataPort, 2023)

Biocaiv: an integrative webserver for motif-based clustering analysis and interactive visualization of biological networks. - Dong-Xu Li; Peng Zhou; Bo-Wei Zhao; Xiao-Rui Su 001; Guo-Dong Li; Jun Zhang 003; Peng-Wei Hu 001; Lun Hu (BMC Bioinform., 2023)

PDA-PRGCN: identification of Piwi-interacting RNA-disease associations through subgraph projection and residual scaling-based feature augmentation. - Ping Zhang 027; Weicheng Sun; Dengguo Wei; Guodong Li; Jinsheng Xu; Zhuhong You; Bowei Zhao; Li Li 057 (BMC Bioinform., 2023)

GGANet: A Model for the Prediction of MiRNA-Drug Resistance Based on Contrastive Learning and Global Attention. - Zimai Zhang; Bo-Wei Zhao; Yu-An Huang; Zhu-Hong You; Lun Hu; Xi Zhou; Pengwei Hu 001 (ICIC (LNBI 1), 2024)

A PiRNA-disease association model incorporating sequence multi-source information with graph convolutional networks. - Lei Wang 121; Zheng-Wei Li 001; Jing Hu; Leon Wong; Bo-Wei Zhao; Zhu-Hong You (Appl. Soft Comput., 2024)

Biolinguistic graph fusion model for circRNA-miRNA association prediction. - Lu-Xiang Guo; Lei Wang 121; Zhu-Hong You; Chang-Qing Yu; Meng-Lei Hu; Bo-Wei Zhao; Yang Li 111 (Briefings Bioinform., 2024)

BioKG-CMI: a multi-source feature fusion model based on biological knowledge graph for predicting circRNA-miRNA interactions. - Mengmeng Wei; Lei Wang 121; Yang Li; Zhengwei Li; Bowei Zhao; Xiao-Rui Su 001; Yu Wei; Zhuhong You (Sci. China Inf. Sci., 2024)

Fusing Higher and Lower-Order Biological Information for Drug Repositioning via Graph Representation Learning. - Bo-Wei Zhao; Lei Wang 121; Pengwei Hu 001; Leon Wong; Xiao-Rui Su 001; Bao-Quan Wang; Zhu-Hong You; Lun Hu (IEEE Trans. Emerg. Top. Comput., 2024)

Likelihood-based feature representation learning combined with neighborhood information for predicting circRNA-miRNA associations. - Lu-Xiang Guo; Lei Wang 121; Zhu-Hong You; Chang-Qing Yu; Meng-Lei Hu; Bo-Wei Zhao; Yang Li 111 (Briefings Bioinform., 2024)

Fuzzy-Based Deep Attributed Graph Clustering. - Yue Yang; Xiaorui Su 001; Bowei Zhao; GuoDong Li; Pengwei Hu 001; Jun Zhang 003; Lun Hu (IEEE Trans. Fuzzy Syst., 2024)

Discovering Consensus Regions for Interpretable Identification of RNA N6-Methyladenosine Modification Sites via Graph Contrastive Clustering. - Guodong Li; Bowei Zhao; Xiaorui Su 001; Yue Yang; Pengwei Hu 001; Xi Zhou; Lun Hu (IEEE J. Biomed. Health Informatics, 2024)

Motif-Aware miRNA-Disease Association Prediction via Hierarchical Attention Network. - Bo-Wei Zhao; Yi-Zhou He; Xiao-Rui Su 001; Yue Yang; Guo-Dong Li; Yu-An Huang; Peng-Wei Hu 001; Zhu-Hong You; Lun Hu (IEEE J. Biomed. Health Informatics, 2024)

Learning Sequential and Structural Dependencies Between Nucleotides for RNA N6-Methyladenosine Site Identification. - Guodong Li; Bowei Zhao; Xiaorui Su 001; Dong-Xu Li; Yue Yang; Zhi Zeng; Lun Hu (IEEE CAA J. Autom. Sinica, 2024)

Capturing short-range and long-range dependencies of nucleotides for identifying RNA N6-methyladenosine modification sites. - Guodong Li; Bowei Zhao; Xiao-Rui Su 001; Yue Yang; Zhi Zeng; Pengwei Hu 001; Lun Hu (Comput. Biol. Medicine, 2025)

Regulation-aware graph learning for drug repositioning over heterogeneous biological network. - Bo-Wei Zhao; Xiao-Rui Su 001; Yue Yang; Dong-Xu Li; Guo-Dong Li; Peng-Wei Hu 001; Zhu-Hong You; Xin Luo 001; Lun Hu (Inf. Sci., 2025)

Knowledge Graph Neural Network With Spatial-Aware Capsule for Drug-Drug Interaction Prediction. - Xiao-Rui Su 001; Bowei Zhao; Guodong Li; Jun Zhang 003; Pengwei Hu 001; Zhuhong You; Lun Hu (IEEE J. Biomed. Health Informatics, 2025)

Brain motor intention Extraction Amplifier: Non-invasive brain-muscle interface. - Ye Sun; Bowei Zhao; Dezhong Yao 001; Rui Zhang 018; Bohan Zhang; Xiaoyuan Li; Jing Wang; Mingxuan Qu; Gang Liu (CoRR, 2025)

Integrating Transformer and Graph Attention Network for circRNA-miRNA Interaction Prediction. - Mengmeng Wei; Lei Wang 121; Bo-Wei Zhao; Xiao-Rui Su 001; Zhu-Hong You; De-Shuang Huang (IEEE J. Biomed. Health Informatics, 2025)

Multi-hop graph structural modeling for cancer-related circRNA-miRNA interaction prediction. - Mengmeng Wei; Lei Wang 121; Xiao-Rui Su 001; Bowei Zhao; Zhuhong You (Pattern Recognit., 2026)