Estimating developmental states of tumors and normal tissues using a linear time-ordered model. - Bo Zhang 009; Beibei Chen; Tao Wu 002; Zhenyu Xuan; Xiaopeng Zhu; Runsheng Chen (BMC Bioinform., 2011)

Integrative analysis of 111 reference human epigenomes Open. - Roadmap Epigenomics Consortium; Anshul Kundaje; Wouter Meuleman; Jason Ernst; Misha Bilenky; Angela Yen; Alireza Heravi Moussavi; Pouya Kheradpour; ZhiZhuo Zhang; Jianrong Wang; Michael J. Ziller; Viren Amin; et al. (Nat., 2015)

Robust principal component analysis for accurate outlier sample detection in RNA-Seq data. - Xiaoying Chen; Bo Zhang 009; Ting Wang 032; Azad Bonni; Guoyan Zhao 002 (BMC Bioinform., 2020)

AIAP: A Quality Control and Integrative Analysis Package to Improve ATAC-seq Data Analysis. - Shaopeng Liu; Daofeng Li; Cheng Lyu; Paul M. Gontarz; Benpeng Miao; Pamela A. F. Madden; Ting Wang 032; Bo Zhang 009 (Genom. Proteom. Bioinform., 2021)

Review and Evaluate the Bioinformatics Analysis Strategies of ATAC-seq and CUT&Tag Data. - Siyuan Cheng 019; Benpeng Miao; Tiandao Li; Guoyan Zhao 002; Bo Zhang 009 (Genom. Proteom. Bioinform., 2024)