Multiple Alignment of Rearranged Genomes. - Aaron E. Darling; Bob Mau; Mark Craven; Nicole T. Perna (CSB, 2004)

Identifying Evolutionarily Conserved Segments Among Multiple Divergent and Rearranged Genomes. - Bob Mau; Aaron E. Darling; Nicole T. Perna (Comparative Genomics, 2004)

GRIL: genome rearrangement and inversion locator. - Aaron E. Darling; Bob Mau; Frederick R. Blattner; Nicole T. Perna (Bioinform., 2004)

Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria. - Jeremy D. Glasner; Guy Plunkett III; Bradley D. Anderson; David J. Baumler; Bryan S. Biehl; Valerie Burland; Eric L. Cabot; Aaron E. Darling; Bob Mau; Eric C. Neeno-Eckwall; David Pot; Yu Qiu; et al. (Nucleic Acids Res., 2008)

Reordering contigs of draft genomes using the Mauve Aligner. - Anna I. Rissman; Bob Mau; Bryan S. Biehl; Aaron E. Darling; Jeremy D. Glasner; Nicole T. Perna (Bioinform., 2009)