TcruziKB: Enabling Complex Queries for Genomic Data Exploration. - Pablo N. Mendes; Bobby McKnight; Amit P. Sheth; Jessica C. Kissinger (ICSC, 2008)

SemanticQA: web-based ontology-driven question answering. - Samir Tartir; Bobby McKnight; Ismailcem Budak Arpinar (SAC, 2009)

Linking and querying genomic datasets using natural language. - Bobby McKnight; Ismailcem Budak Arpinar (BIBM, 2012)