Pardiff: Inference of Differential Expression at Base-Pair Level from RNA-Seq Experiments. - Bogdan Mirauta; Pierre Nicolas; Hugues Richard (ICIAP Workshops, 2013)

Parseq: reconstruction of microbial transcription landscape from RNA-Seq read counts using state-space models. - Bogdan Mirauta; Pierre Nicolas; Hugues Richard (Bioinform., 2014)

Transcriptome analysis from high-throughput sequencing count data. (Etude du transcriptome à partir de données de comptages issues de séquençage haut débit). - Bogdan Mirauta (2014)