Accuracy in Predicting Secondary Structure of Ionic Channels. - Bogumil Konopka; Witold Dyrka; Jean-Christophe Nebel; Malgorzata Kotulska (ICCCI (SCI Volume), 2009)

Quality assessment of protein model-structures based on structural and functional similarities. - Bogumil Konopka; Jean-Christophe Nebel; Malgorzata Kotulska (BMC Bioinform., 2012)

Evaluating the Significance of Protein Functional Similarity Based on Gene Ontology. - Bogumil Konopka; Tomasz Golda; Malgorzata Kotulska (J. Comput. Biol., 2014)

Forecasting residue-residue contact prediction accuracy. - Pawel P. Wozniak; Bogumil Konopka; J. Xu; Gert Vriend; Malgorzata Kotulska (Bioinform., 2017)

Quantiprot - a Python package for quantitative analysis of protein sequences. - Bogumil Konopka; Marta Marciniak; Witold Dyrka (BMC Bioinform., 2017)