ProteinF3S: boosting enzyme function prediction by fusing protein sequence, structure, and surface. - Mingzhi Yuan; Ao Shen; Yingfan Ma; Jie Du; Bohan An; Manning Wang (Briefings Bioinform., 2024)

SeLa-MIL: Developing an instance-level classifier via weakly-supervised self-training for whole slide image classification. - Yingfan Ma; Mingzhi Yuan; Ao Shen; Xiaoyuan Luo; Bohan An; Xinrong Chen; Manning Wang (Comput. Methods Programs Biomed., 2025)