Solvent viscosity dependence of the folding rate of a small protein: Distributed computing study. - Bojan Zagrovic; Vijay Pande (J. Comput. Chem., 2003)

Intrinsically Disordered Regions May Lower the Hydration Free Energy in Proteins: A Case Study of Nudix Hydrolase in the Bacterium Deinococcus radiodurans. - Omar Awile; Anita Krisko; Ivo F. Sbalzarini; Bojan Zagrovic (PLoS Comput. Biol., 2010)

Vienna-PTM web server: a toolkit for MD simulations of protein post-translational modifications. - Christian Margreitter; Drazen Petrov; Bojan Zagrovic (Nucleic Acids Res., 2013)

A Systematic Framework for Molecular Dynamics Simulations of Protein Post-Translational Modifications. - Drazen Petrov; Christian Margreitter; Melanie Grandits; Chris Oostenbrink; Bojan Zagrovic (PLoS Comput. Biol., 2013)

Are Current Atomistic Force Fields Accurate Enough to Study Proteins in Crowded Environments? - Drazen Petrov; Bojan Zagrovic (PLoS Comput. Biol., 2014)

Fuento: functional enrichment for bioinformatics. - David Weichselbaum; Bojan Zagrovic; Anton A. Polyansky (Bioinform., 2017)

mRNA/protein sequence complementarity and its determinants: The impact of affinity scales. - Lukas Bartonek; Bojan Zagrovic (PLoS Comput. Biol., 2017)

VOLPES: an interactive web-based tool for visualizing and comparing physicochemical properties of biological sequences. - Lukas Bartonek; Bojan Zagrovic (Nucleic Acids Res., 2019)

POSTAR3: an updated platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins. - Weihao Zhao; Shang Zhang; Yumin Zhu; Xiaochen Xi; Pengfei Bao; Ziyuan Ma; Thomas H. Kapral; Shuyuan Chen; Bojan Zagrovic; Yu-Cheng T. Yang; Zhi John Lu (Nucleic Acids Res., 2022)

Digging out the Molecular Connections between the Catalytic Mechanism of Human Lysosomal α-Mannosidase and Its Pathophysiology. - Bruno Di Geronimo; Spela Mandl; Santiago Alonso-Gil; Bojan Zagrovic; Gilbert Reibnegger; Christoph Nusshold; Pedro A. Sánchez-Murcia (J. Chem. Inf. Model., 2025)