Prediction of tumor purity from gene expression data using machine learning. - Bonil Koo; Je-Keun Rhee (Briefings Bioinform., 2021)

Deep learning-based survival prediction using DNA methylation-derived 3D genomic information. - Jeewon Yang; Dohoon Lee; Bonil Koo; Dabin Jeong; Sun Kim (BCB, 2023)

Improved drug response prediction by drug target data integration via network-based profiling. - Minwoo Pak; Sangseon Lee; Inyoung Sung; Bonil Koo; Sun Kim (Briefings Bioinform., 2023)

Metheor: Ultrafast DNA methylation heterogeneity calculation from bisulfite read alignments. - Dohoon Lee; Bonil Koo; Jeewon Yang; Sun Kim (PLoS Comput. Biol., 2023)

GOAT: Gene-level biomarker discovery from multi-Omics data using graph ATtention neural network for eosinophilic asthma subtype. - Dabin Jeong; Bonil Koo; Minsik Oh; Tae-Bum Kim; Sun Kim (Bioinform., 2023)

Transfer learning of condition-specific perturbation in gene interactions improves drug response prediction. - Dongmin Bang; Bonil Koo; Sun Kim (Bioinform., 2024)