Gramene: a growing plant comparative genomics resource. - Chengzhi Liang; Pankaj Jaiswal; Claire Hebbard; Shuly Avraham; Edward S. Buckler; Terry M. Casstevens; Bonnie L. Hurwitz; Susan McCouch; Junjian Ni; Anuradha Pujar; Dean Ravenscroft; Liya Ren; et al. (Nucleic Acids Res., 2008)

Language-Agnostic Optimization and Parallelization for Interpreted Languages. - Michelle Mills Strout; Saumya Debray; Kate Isaacs; Barbara Kreaseck; Julio Cárdenas-Rodríguez; Bonnie L. Hurwitz; Kat Volk; Sam Badger; Jesse Bartels; Ian J. Bertolacci; Sabin Devkota; Anthony Encinas; et al. (LCPC, 2017)

Libra: Improved Partitioning Strategies for Massive Comparative Metagenomics Analysis. - Illyoung Choi; Alise J. Ponsero; Ken Youens-Clark; Matthew Bomhoff; Bonnie L. Hurwitz; John H. Hartman (ScienceCloud@HPDC, 2018)

Identification and quantitation of clinically relevant microbes in patient samples: Comparison of three k-mer based classifiers for speed, accuracy, and sensitivity. - George S. Watts; James E. Thornton Jr.; Ken Youens-Clark; Alise J. Ponsero; Marvin J. Slepian; Emmanuel Menashi; Charles Hu; Wuquan Deng; David G. Armstrong; Spenser Reed; Lee D. Cranmer; Bonnie L. Hurwitz (PLoS Comput. Biol., 2019)

Planet Microbe: a platform for marine microbiology to discover and analyze interconnected 'omics and environmental data. - Alise J. Ponsero; Matthew Bomhoff; Kai Lewis Blumberg; Ken Youens-Clark; Nina M. Herz; Elisha M. Wood-Charlson; Edward F. Delong; Bonnie L. Hurwitz (Nucleic Acids Res., 2021)