genBlastG: using BLAST searches to build homologous gene models. - Rong She; Jeffrey Shih-Chieh Chu; Bora Uyar; Jun Wang; Ke Wang 001; Nansheng Chen (Bioinform., 2011)

ELM - the database of eukaryotic linear motifs. - Holger Dinkel; Sushama Michael; Robert J. Weatheritt; Norman E. Davey; Kim Van Roey; Brigitte Altenberg; Grischa Toedt; Bora Uyar; Markus Seiler; Aidan Budd; Lisa Jödicke; Marcel A. Dammert; et al. (Nucleic Acids Res., 2012)

The Roles of Short Linear Motifs in Human Diseases. - Bora Uyar; Toby J. Gibson (IWBBIO, 2014)

The eukaryotic linear motif resource ELM: 10 years and counting. - Holger Dinkel; Kim Van Roey; Sushama Michael; Norman E. Davey; Robert J. Weatheritt; Diana Born; Tobias Speck; Daniel Krüger; Gleb Grebnev; Marta Kuban; Marta Strumillo; Bora Uyar; et al. (Nucleic Acids Res., 2014)

ELM 2016 - data update and new functionality of the eukaryotic linear motif resource. - Holger Dinkel; Kim Van Roey; Sushama Michael; Manjeet Kumar; Bora Uyar; Brigitte Altenberg; Vladislava Milchevskaya; Melanie Schneider; Helen Kühn; Annika Behrendt; Sophie Luise Dahl; Victoria Damerell; et al. (Nucleic Acids Res., 2016)

PocketVina Enables Scalable and Highly Accurate Physically Valid Docking through Multi-Pocket Conditioning. - Ahmet Sarigün; Bora Uyar; Vedran Franke; Altuna Akalin (CoRR, 2025)