PPDB, the Plant Proteomics Database at Cornell. - Qi Sun; Boris L. Zybailov; Wojciech Majeran; Giulia Friso; Paul Dominic B. Olinares; Klaas J. van Wijk (Nucleic Acids Res., 2009)

XLPM: efficient algorithm for the analysis of protein-protein contacts using chemical cross-linking mass spectrometry. - Mihir Jaiswal; Nathaniel Crabtree; Michael A. Bauer 002; Roger A. Hall; Kevin D. Raney; Boris L. Zybailov (BMC Bioinform., 2014)

GSAR: Bioconductor package for Gene Set analysis in R. - Yasir Rahmatallah; Boris L. Zybailov; Frank Emmert-Streib; Galina V. Glazko (BMC Bioinform., 2017)