Inferring dynamic architecture of cellular networks using time series of gene expression, protein and metabolite data. - Eduardo D. Sontag; Anatoly Kiyatkin; Boris N. Kholodenko (Bioinform., 2004)

A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks. - Holger Conzelmann; Julio Saez-Rodriguez; Thomas Sauter; Boris N. Kholodenko; Ernst Dieter Gilles (BMC Bioinform., 2006)

Positional Information Generated by Spatially Distributed Signaling Cascades. - Javier Muñoz-García; Zoltan Neufeld; Boris N. Kholodenko (PLoS Comput. Biol., 2009)

Switches, Excitable Responses and Oscillations in the Ring1B/Bmi1 Ubiquitination System. - Lan K. Nguyen; Javier Muñoz-García; Helene Maccario; Aaron Ciechanover; Walter Kolch; Boris N. Kholodenko (PLoS Comput. Biol., 2011)

Bimodal Protein Distributions in Heterogeneous Oscillating Systems. - Maciej Dobrzynski; Dirk Fey; Lan K. Nguyen; Boris N. Kholodenko (CMSB, 2012)

Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise. - Marc R. Birtwistle; Jens Rauch; Anatoly Kiyatkin; Edita Aksamitiene; Maciej Dobrzynski; Jan B. Hoek; Walter Kolch; Babatunde A. Ogunnaike; Boris N. Kholodenko (BMC Syst. Biol., 2012)

Integrating Bayesian variable selection with Modular Response Analysis to infer biochemical network topology. - Tapesh Santra; Walter Kolch; Boris N. Kholodenko (BMC Syst. Biol., 2013)

Navigating the Multilayered Organization of Eukaryotic Signaling: A New Trend in Data Integration. - Tapesh Santra; Walter Kolch; Boris N. Kholodenko (PLoS Comput. Biol., 2014)

MST2-RASSF protein-protein interactions through SARAH domains. - Goar Sánchez-Sanz; David Matallanas; Lan K. Nguyen; Boris N. Kholodenko; Edina Rosta; Walter Kolch; Nicolae-Viorel Buchete (Briefings Bioinform., 2016)

SARAH Domain-Mediated MST2-RASSF Dimeric Interactions. - Goar Sánchez-Sanz; Bartlomiej Tywoniuk; David Matallanas; David Romano; Lan K. Nguyen; Boris N. Kholodenko; Edina Rosta; Walter Kolch; Nicolae-Viorel Buchete (PLoS Comput. Biol., 2016)

Modeling cell line-specific recruitment of signaling proteins to the insulin-like growth factor 1 receptor. - Keesha E. Erickson; Oleksii S. Rukhlenko; MD Shahinuzzaman; Kalina P. Slavkova; Yen Ting Lin; Ryan Suderman; Edward C. Stites; Marian Anghel; Richard G. Posner; Dipak Barua; Boris N. Kholodenko; William S. Hlavacek (PLoS Comput. Biol., 2019)