ALIGN_MTX - An optimal pairwise textual sequence alignment program, adapted for using in sequence-structure alignment. - Boris Vishnepolsky; Malak Pirtskhalava (Comput. Biol. Chem., 2009)

Prediction of Linear Cationic Antimicrobial Peptides Based on Characteristics Responsible for Their Interaction with the Membranes. - Boris Vishnepolsky; Malak Pirtskhalava (J. Chem. Inf. Model., 2014)

DBAASP v.2: an enhanced database of structure and antimicrobial/cytotoxic activity of natural and synthetic peptides. - Malak Pirtskhalava; Andrei E. Gabrielian; Phillip Cruz; Hannah L. Griggs; R. Burke Squires; Darrell E. Hurt; Maia Grigolava; Mindia Chubinidze; George Gogoladze; Boris Vishnepolsky; Vsevolod Alekseev; Alex Rosenthal; et al. (Nucleic Acids Res., 2016)

Predictive Model of Linear Antimicrobial Peptides Active against Gram-Negative Bacteria. - Boris Vishnepolsky; Andrei E. Gabrielian; Alex Rosenthal; Darrell E. Hurt; Michael Tartakovsky; Grigol Managadze; Maya Grigolava; George I. Makhatadze; Malak Pirtskhalava (J. Chem. Inf. Model., 2018)

Comment on: 'Empirical comparison of web-based antimicrobial peptide prediction tools'. - Boris Vishnepolsky; Malak Pirtskhalava (Bioinform., 2019)

DBAASP v3: database of antimicrobial/cytotoxic activity and structure of peptides as a resource for development of new therapeutics. - Malak Pirtskhalava; Anthony A. Amstrong; Maia Grigolava; Mindia Chubinidze; Evgenia Alimbarashvili; Boris Vishnepolsky; Andrei E. Gabrielian; Alex Rosenthal; Darrell E. Hurt; Michael Tartakovsky (Nucleic Acids Res., 2021)

Comparative analysis of machine learning algorithms on the microbial strain-specific AMP prediction. - Boris Vishnepolsky; Maya Grigolava; Grigol Managadze; Andrei Gabrielian; Alex Rosenthal; Darrell E. Hurt; Michael Tartakovsky; Malak Pirtskhalava (Briefings Bioinform., 2022)