Biology - Computing large sparse multivariate optimization problems with an application in biophysics. - Emre H. Brookes; Rajendra V. Boppana; Borries Demeler (SC, 2006)

Parsimonious regularization using genetic algorithms applied to the analysis of analytical ultracentrifugation experiments. - Emre H. Brookes; Borries Demeler (GECCO, 2007)

Performance optimization of large non-negatively constrained least squares problems with an application in biophysics. - Emre H. Brookes; Borries Demeler (TG, 2010)

UltraScan gateway enhancements: in collaboration with TeraGrid advanced user support. - Borries Demeler; Raminderjeet Singh; Marlon E. Pierce; Emre H. Brookes; Suresh Marru; Bruce Dubbs (TG, 2011)

Ultrascan solution modeler: integrated hydrodynamic parameter and small angle scattering computation and fitting tools. - Emre H. Brookes; Raminderjeet Singh; Marlon E. Pierce; Suresh Marru; Borries Demeler; Mattia Rocco (XSEDE, 2012)

US-SOMO cluster methods: year one perspective. - Emre H. Brookes; Raminderjeet Singh; Marlon E. Pierce; Suresh Marru; Borries Demeler; Mattia Rocco (XSEDE, 2013)

Improvements of the UltraScan scientific gateway to enable computational jobs on large-scale and open-standards based cyberinfrastructures. - M. Shahbaz Memon; Norbert Attig; Gary Gorbet; Lahiru Gunathilake; Morris Riedel; Thomas Lippert; Suresh Marru; Andrew S. Grimshaw; Florian Janetzko; Borries Demeler; Raminder Singh (XSEDE, 2013)

The apache airavata application programming interface: overview and evaluation with the UltraScan science gateway. - Marlon E. Pierce; Suresh Marru; Borries Demeler; Raminderjeet Singh; Gary Gorbet (GCE@SC, 2014)

Advancements of the UltraScan scientific gateway for open standards-based cyberinfrastructures. - M. Shahbaz Memon; Morris Riedel; Florian Janetzko; Borries Demeler; Gary Gorbet; Suresh Marru; Andrew S. Grimshaw; Lahiru Gunathilake; Raminder Singh; Norbert Attig; Thomas Lippert (Concurr. Comput. Pract. Exp., 2014)

A performance predictor for UltraScan supercomputer calculations. - Haram Kim; Emre H. Brookes; Borries Demeler (XSEDE, 2015)

Moving analytical ultracentrifugation software to a good manufacturing practices (GMP) environment. - Alexey Savelyev; Gary Gorbet; Amy Henrickson; Borries Demeler (PLoS Comput. Biol., 2020)