Comment on 'Protein isoelectric point as a predictor for increased crystallization screening efficiency'. - Thomas Huber; Bostjan Kobe (Bioinform., 2004)

Protein kinases associated with the yeast phosphoproteome. - Ross I. Brinkworth; Alan L. Munn; Bostjan Kobe (BMC Bioinform., 2006)

Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sites. - Neil F. W. Saunders; Ross I. Brinkworth; Thomas Huber; Bruce E. Kemp; Bostjan Kobe (BMC Bioinform., 2008)

The Predikin webserver: improved prediction of protein kinase peptide specificity using structural information. - Neil F. W. Saunders; Bostjan Kobe (Nucleic Acids Res., 2008)

Discovering Sequence Motifs with Arbitrary Insertions and Deletions. - Martin C. Frith; Neil F. W. Saunders; Bostjan Kobe; Timothy L. Bailey (PLoS Comput. Biol., 2008)

Comparing METS and OAI-ORE for Encapsulating Scientific Data Products: A Protein Crystallography Case Study. - Charles Brooking; Stephen R. Shouldice; Gautier Robin; Bostjan Kobe; Jennifer L. Martin; Jane Hunter 001 (eScience, 2009)

Identification of novel target sites and an inhibitor of the dengue virus E protein. - Ragothaman Yennamalli; Naidu Subbarao; Thorsten Kampmann; Ross P. McGeary; Paul R. Young; Bostjan Kobe (J. Comput. Aided Mol. Des., 2009)

A probabilistic model of nuclear import of proteins. - Ahmed M. Mehdi; Muhammad Shoaib B. Sehgal; Bostjan Kobe; Timothy L. Bailey; Mikael Bodén (Bioinform., 2011)

Mapping the stabilome: a novel computational method for classifying metabolic protein stability. - Ralph Patrick; Kim-Anh Lê Cao; Melissa J. Davis; Bostjan Kobe; Mikael Bodén (BMC Syst. Biol., 2012)

DLocalMotif: a discriminative approach for discovering local motifs in protein sequences. - Ahmed M. Mehdi; Muhammad Shoaib B. Sehgal; Bostjan Kobe; Timothy L. Bailey; Mikael Bodén (Bioinform., 2013)

PREDIVAC: CD4+ T-cell epitope prediction for vaccine design that covers 95% of HLA class II DR protein diversity. - Patricio Oyarzún; Jonathan J. Ellis; Mikael Bodén; Bostjan Kobe (BMC Bioinform., 2013)

PhosphoPICK: modelling cellular context to map kinase-substrate phosphorylation events. - Ralph Patrick; Kim-Anh Lê Cao; Bostjan Kobe; Mikael Bodén (Bioinform., 2015)

PhosphoPICK-SNP: quantifying the effect of amino acid variants on protein phosphorylation. - Ralph Patrick; Bostjan Kobe; Kim-Anh Lê Cao; Mikael Bodén (Bioinform., 2017)

Engineering indel and substitution variants of diverse and ancient enzymes using Graphical Representation of Ancestral Sequence Predictions (GRASP). - Gabriel Foley; Ariane Mora; Connie M. Ross; Scott Bottoms; Leander Sützl; Marnie L. Lamprecht; Julian Zaugg; Alexandra Essebier; Brad Balderson; Rhys Newell; Raine E. S. Thomson; Bostjan Kobe; et al. (PLoS Comput. Biol., 2022)