t2prhd: a tool to study the patterns of repeat evolution. - Botond Sipos; Kálmán Somogyi; István Andó; Zsolt Pénzes (BMC Bioinform., 2008)

PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment. - Botond Sipos; Tim Massingham; Gregory E. Jordan; Nick Goldman (BMC Bioinform., 2011)

Towards practical, high-capacity, low-maintenance information storage in synthesized DNA. - Nick Goldman; Paul Bertone; Siyuan Chen; Christophe Dessimoz; Emily M. LeProust; Botond Sipos; Ewan Birney (Nat., 2013)

Amino Acid Changes in Disease-Associated Variants Differ Radically from Variants Observed in the 1000 Genomes Project Dataset. - Tjaart A. P. de Beer; Roman A. Laskowski; Sarah L. Parks; Botond Sipos; Nick Goldman; Janet M. Thornton (PLoS Comput. Biol., 2013)

Phylogenetic Quantification of Intra-tumour Heterogeneity. - Roland F. Schwarz; Anne Trinh; Botond Sipos; James D. Brenton; Nick Goldman; Florian Markowetz (PLoS Comput. Biol., 2014)

Ensembl 2023. - Fergal J. Martin; M. Ridwan Amode; Alisha Aneja; Olanrewaju Austine-Orimoloye; Andrey G. Azov; If Barnes; Arne Becker; Ruth Bennett; Andrew E. Berry; Jyothish Bhai; Simarpreet Kaur Bhurji; Alexandra Bignell; et al. (Nucleic Acids Res., 2023)