The Planteome Project. - Laurel Cooper; Austin Meier; Justin Elser; Justin Preece; Xu Xu; Ryan Kitchen; Botong Qu; Eugene Zhang; Sinisa Todorovic; Pankaj Jaiswal; Marie-Angélique Laporte; Elizabeth Arnaud; et al. (ICBO/BioCreative, 2016)

Planteome Gene Annotation Enrichment Analysis. - Botong Qu; Jaden Diefenbaugh; Eugene Zhang; Justin Elser; Pankaj Jaiswal; Seth Carbon; Christopher J. Mungall (ICBO/BioCreative, 2016)

Interactive design and visualization of N-ary relationships. - Botong Qu; Prashant Kumar; Eugene Zhang; Pankaj Jaiswal; Laurel Cooper; Justin Elser; Yue Zhang 009 (SIGGRAPH Asia Symposium on Visualization, 2017)

Interactive multi-style pen-and-ink drawings from images. - Botong Qu; Yue Zhang 009; Eugene Zhang (SIGGRAPH Asia Technical Briefs, 2017)

The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics. - Laurel Cooper; Austin Meier; Marie-Angélique Laporte; Justin Elser; Chris Mungall; Brandon T. Sinn; Dario Cavaliere; Seth Carbon; Nathan A. Dunn; Barry Smith 001; Botong Qu; Justin Preece; et al. (Nucleic Acids Res., 2018)

Multi-Scale Topological Analysis of Asymmetric Tensor Fields on Surfaces. - Fariba Khan; Lawrence Roy; Eugene Zhang; Botong Qu; Shih-Hsuan Hung; Harry Yeh; Robert S. Laramee; Yue Zhang 009 (IEEE Trans. Vis. Comput. Graph., 2020)

Mode Surfaces of Symmetric Tensor Fields: Topological Analysis and Seamless Extraction. - Botong Qu; Lawrence Roy; Yue Zhang 009; Eugene Zhang (IEEE Trans. Vis. Comput. Graph., 2021)

Automatic Polygon Layout for Primal-Dual Visualization of Hypergraphs. - Botong Qu; Eugene Zhang; Yue Zhang 009 (IEEE Trans. Vis. Comput. Graph., 2022)